Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10085172	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12526300	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12528003	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529908	0.92[ASN][1000 genomes]
rs2038836	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2038837	0.81[EUR][1000 genomes]
rs4551206	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4945685	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945686	0.94[ASN][1000 genomes]
rs4946568	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5012746	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67127305	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67418017	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6908897	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6913498	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6930098	0.85[ASN][1000 genomes]
rs7738656	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7767249	0.89[ASN][1000 genomes]
rs7775464	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482160	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9490232	0.85[ASN][1000 genomes]
rs9490238	0.81[EUR][1000 genomes]
rs9490239	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717000-121720200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:121717000-121722000	Enhancers	Fetal Intestine Large	intestine
3	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121718000-121720000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:121719000-121722200	Enhancers	Fetal Intestine Small	intestine
6	chr6:121719800-121721000	Weak transcription	Rectal Mucosa Donor 31	rectum

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