Variant report

Variant	rs9490232
Chromosome Location	chr6:121721586-121721587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12526300	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12528003	0.85[ASN][1000 genomes]
rs12529908	0.83[ASN][1000 genomes]
rs2038836	0.85[ASN][1000 genomes]
rs4551206	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4945685	0.90[ASN][1000 genomes]
rs4945686	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4946568	0.85[ASN][1000 genomes]
rs5012746	0.86[ASN][1000 genomes]
rs67127305	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs67418017	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6908897	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6913498	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7738656	0.83[ASN][1000 genomes]
rs7767249	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7775464	0.88[ASN][1000 genomes]
rs7775586	0.85[ASN][1000 genomes]
rs9401398	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717000-121722000	Enhancers	Fetal Intestine Large	intestine
2	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121719000-121722200	Enhancers	Fetal Intestine Small	intestine
4	chr6:121720000-121721600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:121720600-121722000	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:121720800-121721600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:121721000-121722000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:121721000-121722200	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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