Variant report

Variant	rs6908897
Chromosome Location	chr6:121727236-121727237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12526300	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12528003	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12529908	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1925222	0.81[ASN][1000 genomes]
rs2038836	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4376375	0.81[ASN][1000 genomes]
rs4551206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4945685	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4945686	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946568	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs5012746	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs66584012	0.81[ASN][1000 genomes]
rs67127305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67418017	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67502032	0.81[ASN][1000 genomes]
rs68096413	0.81[ASN][1000 genomes]
rs6913498	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6930098	0.81[ASN][1000 genomes]
rs7738656	0.93[ASN][1000 genomes]
rs7767249	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7775464	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7775586	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9401398	0.81[ASN][1000 genomes]
rs9482157	0.82[ASN][1000 genomes]
rs9490232	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121724400-121727400	Enhancers	Fetal Intestine Large	intestine
2	chr6:121725200-121727400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr6:121726400-121727400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:121726400-121727400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:121726400-121727600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:121726600-121727400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:121726600-121727400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:121726600-121727400	Enhancers	Pancreas	Pancrea
9	chr6:121726600-121727600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:121727000-121727400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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