Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12529908	0.86[ASN][1000 genomes]
rs1925221	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4376375	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945685	0.80[ASN][1000 genomes]
rs4945686	0.81[ASN][1000 genomes]
rs66584012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67199580	0.82[AFR][1000 genomes]
rs67502032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68096413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908897	0.81[ASN][1000 genomes]
rs7738656	0.87[ASN][1000 genomes]
rs7775464	0.82[ASN][1000 genomes]
rs9482153	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9482154	0.82[AFR][1000 genomes]
rs9482156	0.81[EUR][1000 genomes]
rs9482157	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9490219	0.84[AFR][1000 genomes]
rs9490220	0.82[AFR][1000 genomes]
rs9490222	0.88[CEU][hapmap];0.92[YRI][hapmap]
rs9490225	0.89[ASW][hapmap];0.82[CEU][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs9490226	0.88[CEU][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1925222	TRDN	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121697200-121698800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121697400-121698800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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