Variant report

Variant	rs58740457
Chromosome Location	chr6:11850170-11850171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1205870	1.00[AMR][1000 genomes]
rs6933804	1.00[AMR][1000 genomes]
rs6941131	1.00[AMR][1000 genomes]
rs6941620	1.00[AMR][1000 genomes]
rs73721857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9380686	1.00[AMR][1000 genomes]
rs9470817	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11847000-11851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:11847000-11851600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:11847200-11851400	Weak transcription	NHEK	skin
6	chr6:11847200-11854600	Weak transcription	Gastric	stomach
7	chr6:11847600-11851400	ZNF genes & repeats	GM12878-XiMat	blood
8	chr6:11848000-11850400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:11848200-11850200	Enhancers	Fetal Lung	lung
10	chr6:11848400-11850200	Enhancers	NH-A	brain
11	chr6:11848400-11851600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:11848600-11850400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:11849000-11853800	Weak transcription	Stomach Mucosa	stomach
14	chr6:11849000-11854000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:11849200-11850200	Enhancers	Liver	Liver
16	chr6:11849400-11850200	Enhancers	Hela-S3	cervix
17	chr6:11849400-11850400	Enhancers	K562	blood
18	chr6:11849600-11850200	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:11849600-11850200	Enhancers	HSMMtube	muscle
20	chr6:11849600-11850400	Enhancers	Pancreas	Pancrea
21	chr6:11849600-11850600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:11849800-11851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:11849800-11851200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:11849800-11851200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:11850000-11851000	Weak transcription	HSMM	muscle
27	chr6:11850000-11851200	Weak transcription	HMEC	breast
28	chr6:11850000-11851600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:11850000-11851800	Weak transcription	Osteobl	bone
30	chr6:11850000-11852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel

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