Variant report

Variant	rs9380686
Chromosome Location	chr6:11975841-11975842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11966269..11970218-chr6:11973328..11977432,3	K562	blood:
2	chr6:11974666..11976581-chr6:11977249..11978780,2	K562	blood:
3	chr6:11975763..11978241-chr6:12007588..12010164,2	MCF-7	breast:
4	chr6:11925920..11928166-chr6:11973706..11976576,2	K562	blood:
5	chr6:11970246..11972167-chr6:11973565..11976424,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

rs_ID	r²[population]
rs1205870	1.00[AMR][1000 genomes]
rs1475355	1.00[AMR][1000 genomes]
rs2327510	1.00[AMR][1000 genomes]
rs4714143	1.00[AMR][1000 genomes]
rs58740457	1.00[AMR][1000 genomes]
rs6933804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941131	1.00[AMR][1000 genomes]
rs6941620	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73721857	1.00[AMR][1000 genomes]
rs9380685	0.92[AFR][1000 genomes]
rs9470817	1.00[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11974600-11976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:11974800-11976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:11975000-11976000	Weak transcription	HSMM	muscle
5	chr6:11975000-11976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:11975000-11977200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:11975200-11977000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:11975200-11978400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:11975200-11978400	Weak transcription	Hela-S3	cervix
10	chr6:11975400-11976000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:11975400-11977000	Enhancers	Primary B cells from cord blood	blood
12	chr6:11975400-11977000	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:11975400-11977000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:11975400-11977200	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:11975400-11978600	Weak transcription	NH-A	brain
16	chr6:11975600-11976400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:11975600-11976400	Enhancers	HSMMtube	muscle
18	chr6:11975600-11977000	Enhancers	Fetal Thymus	thymus
19	chr6:11975800-11976000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:11975800-11976000	Enhancers	Placenta Amnion	Placenta Amnion
21	chr6:11975800-11976200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:11975800-11976200	Enhancers	Spleen	Spleen
23	chr6:11975800-11976400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:11975800-11976400	Enhancers	Esophagus	oesophagus
25	chr6:11975800-11976400	Enhancers	Fetal Muscle Leg	muscle
26	chr6:11975800-11976800	Enhancers	Primary T cells from cord blood	blood
27	chr6:11975800-11976800	Enhancers	Thymus	Thymus
28	chr6:11975800-11976800	Enhancers	NHEK	skin
29	chr6:11975800-11977000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:11975800-11977000	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:11975800-11977400	Enhancers	GM12878-XiMat	blood
32	chr6:11975800-11979200	Enhancers	K562	blood

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