Variant report

Variant	rs58741453
Chromosome Location	chr4:127818680-127818681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs36190498	1.00[EUR][1000 genomes]
rs55673139	1.00[EUR][1000 genomes]
rs55712703	1.00[EUR][1000 genomes]
rs56099729	1.00[EUR][1000 genomes]
rs56921171	1.00[EUR][1000 genomes]
rs57546317	1.00[EUR][1000 genomes]
rs59395244	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59431933	1.00[EUR][1000 genomes]
rs60537667	1.00[EUR][1000 genomes]
rs73848011	1.00[EUR][1000 genomes]
rs73848016	1.00[EUR][1000 genomes]
rs73848020	1.00[EUR][1000 genomes]
rs73848024	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73848027	1.00[EUR][1000 genomes]
rs9917914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127812000-127819000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:127812400-127820000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:127812600-127819600	Weak transcription	NHDF-Ad	bronchial
4	chr4:127817400-127819800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:127817600-127821200	ZNF genes & repeats	K562	blood
6	chr4:127817800-127818800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr4:127817800-127819800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:127817800-127819800	Weak transcription	Adipose Nuclei	Adipose
9	chr4:127818000-127818800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:127818200-127818800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:127818600-127818800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:127818600-127820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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