Variant report
| Variant | rs73848024 |
|---|---|
| Chromosome Location | chr4:127790101-127790102 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs36190498 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55673139 | 1.00[EUR][1000 genomes] |
| rs55712703 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55982855 | 1.00[AMR][1000 genomes] |
| rs56099729 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56921171 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57546317 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58741453 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59395244 | 1.00[EUR][1000 genomes] |
| rs59431933 | 1.00[EUR][1000 genomes] |
| rs59551421 | 1.00[AMR][1000 genomes] |
| rs60309298 | 1.00[AMR][1000 genomes] |
| rs60537667 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73846097 | 1.00[AMR][1000 genomes] |
| rs73848006 | 1.00[AMR][1000 genomes] |
| rs73848011 | 1.00[EUR][1000 genomes] |
| rs73848016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73848020 | 1.00[EUR][1000 genomes] |
| rs73848027 | 1.00[EUR][1000 genomes] |
| rs9917914 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879909 | chr4:127646765-127792639 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv879910 | chr4:127646765-127805466 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv879911 | chr4:127646765-127835677 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv428773 | chr4:127760014-127913973 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127772800-127792000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
