Variant report

Variant	rs58745048
Chromosome Location	chr8:107099032-107099033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107092680..107095598-chr8:107097096..107099230,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11996634	1.00[EUR][1000 genomes]
rs16874064	1.00[EUR][1000 genomes]
rs59493472	1.00[EUR][1000 genomes]
rs61210085	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73297455	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7814040	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840567	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107095600-107099200	Weak transcription	Fetal Lung	lung
2	chr8:107095800-107099200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:107097200-107099400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:107097200-107100000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr8:107097600-107100000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:107097800-107099400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:107097800-107100600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:107098000-107100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:107098200-107099200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr8:107098400-107099200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr8:107098600-107099200	Enhancers	HUVEC	blood vessel
12	chr8:107098600-107099200	Enhancers	NHDF-Ad	bronchial
13	chr8:107098600-107099400	Enhancers	Stomach Mucosa	stomach
14	chr8:107098600-107100000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:107098600-107100200	Enhancers	HMEC	breast
16	chr8:107098800-107099200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr8:107098800-107099200	Enhancers	Adipose Nuclei	Adipose
18	chr8:107098800-107099200	Enhancers	Brain Hippocampus Middle	brain
19	chr8:107098800-107099200	Enhancers	Brain Substantia Nigra	brain
20	chr8:107098800-107099600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:107098800-107100000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr8:107098800-107100000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:107098800-107100200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:107098800-107100200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:107098800-107100200	Enhancers	NHEK	skin
26	chr8:107098800-107100400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:107099000-107099200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:107099000-107099200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:107099000-107099400	Enhancers	Esophagus	oesophagus
30	chr8:107099000-107099400	Enhancers	Gastric	stomach
31	chr8:107099000-107099400	Enhancers	Right Atrium	heart
32	chr8:107099000-107099600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:107099000-107100000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:107099000-107100000	Enhancers	HepG2	liver
35	chr8:107099000-107100200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr8:107099000-107100200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:107099000-107100200	Enhancers	Fetal Kidney	kidney

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