Variant report

Variant	rs59493472
Chromosome Location	chr8:107058284-107058285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107055539..107058466-chr8:107069487..107071012,2	K562	blood:
2	chr8:107057702..107058412-chr8:107636030..107636553,2	MCF-7	breast:
3	chr8:107047054..107052420-chr8:107054763..107060033,4	K562	blood:
4	chr8:107054893..107058550-chr8:107060735..107063239,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11996634	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58745048	1.00[EUR][1000 genomes]
rs61210085	1.00[EUR][1000 genomes]
rs73297455	1.00[EUR][1000 genomes]
rs7814040	1.00[EUR][1000 genomes]
rs7840567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107056000-107058800	Enhancers	Fetal Kidney	kidney
3	chr8:107056400-107059000	Weak transcription	Colon Smooth Muscle	Colon
4	chr8:107056400-107060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107057000-107060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:107057200-107058600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:107057200-107058600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:107057200-107059800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:107057200-107060600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107057200-107060800	Enhancers	NHDF-Ad	bronchial
11	chr8:107057200-107060800	Enhancers	Osteobl	bone
12	chr8:107057400-107058600	Enhancers	Stomach Mucosa	stomach
13	chr8:107057400-107060000	Enhancers	Hela-S3	cervix
14	chr8:107057800-107058400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr8:107057800-107058600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:107057800-107058600	Enhancers	Aorta	Aorta
17	chr8:107057800-107058600	Flanking Active TSS	HUVEC	blood vessel
18	chr8:107057800-107059200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:107057800-107059400	Enhancers	NHEK	skin
20	chr8:107057800-107060000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:107058000-107058600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:107058000-107058600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:107058000-107058600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:107058000-107058800	Flanking Active TSS	NH-A	brain
25	chr8:107058000-107059000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:107058000-107059400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:107058000-107059400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:107058000-107059400	Enhancers	HMEC	breast
29	chr8:107058000-107059600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:107058000-107060400	Enhancers	NHLF	lung
31	chr8:107058000-107060800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:107058200-107058600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:107058200-107058800	Enhancers	Rectal Smooth Muscle	rectum
34	chr8:107058200-107058800	Flanking Active TSS	A549	lung
35	chr8:107058200-107059000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr8:107058200-107059200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr8:107058200-107060400	Enhancers	HUES64 Cell Line	embryonic stem cell

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