Variant report

Variant	rs58747753
Chromosome Location	chr14:69379311-69379312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69378536..69380644-chr14:69471765..69473776,2	MCF-7	breast:
2	chr14:69377936..69380482-chr14:69440340..69442074,2	MCF-7	breast:
3	chr14:69376851..69382793-chr14:69441155..69448781,14	MCF-7	breast:
4	chr14:69377931..69381978-chr14:69382009..69387098,5	MCF-7	breast:
5	chr14:69378410..69381040-chr14:69408422..69410281,2	K562	blood:
6	chr14:69261064..69263577-chr14:69378410..69381020,2	MCF-7	breast:
7	chr14:69378571..69380525-chr14:69392033..69394112,2	K562	blood:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1009145	0.82[ASN][1000 genomes]
rs12588423	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2003746	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268983	0.81[ASN][1000 genomes]
rs2268985	0.82[ASN][1000 genomes]
rs2268986	0.82[ASN][1000 genomes]
rs2300876	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2300878	0.82[ASN][1000 genomes]
rs28574858	0.82[ASN][1000 genomes]
rs3742897	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784140	0.86[AMR][1000 genomes]
rs4902672	0.80[ASN][1000 genomes]
rs61602390	0.81[AMR][1000 genomes]
rs72733527	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72733528	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72733532	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72733546	0.84[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69337800-69380600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:69341800-69380400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
6	chr14:69346800-69379800	Strong transcription	Fetal Intestine Large	intestine
7	chr14:69348200-69389200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:69354000-69393200	Strong transcription	NHEK	skin
9	chr14:69354600-69393000	Strong transcription	Dnd41	blood
10	chr14:69360600-69388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:69362000-69380400	Strong transcription	NHDF-Ad	bronchial
12	chr14:69362600-69389200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:69363200-69379400	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr14:69366000-69382000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:69367400-69382800	Strong transcription	Fetal Stomach	stomach
17	chr14:69369000-69391200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:69372400-69380800	Genic enhancers	Stomach Smooth Muscle	stomach
19	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:69372600-69388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:69375000-69384600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr14:69375800-69380600	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr14:69375800-69382200	Weak transcription	Thymus	Thymus
24	chr14:69376000-69383200	Weak transcription	Brain Anterior Caudate	brain
25	chr14:69376000-69385600	Weak transcription	K562	blood
26	chr14:69376000-69388600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:69376000-69389400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:69376000-69395400	Weak transcription	Brain Angular Gyrus	brain
29	chr14:69376200-69381800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:69376200-69382200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:69376200-69383200	Weak transcription	Fetal Brain Female	brain
32	chr14:69376200-69386200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:69376400-69383400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:69376400-69385800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:69376600-69392400	Weak transcription	Brain Germinal Matrix	brain
36	chr14:69376800-69380600	Genic enhancers	Duodenum Smooth Muscle	Duodenum
37	chr14:69376800-69382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:69376800-69382000	Weak transcription	Gastric	stomach
39	chr14:69376800-69383200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:69376800-69383400	Weak transcription	Spleen	Spleen
41	chr14:69377000-69380200	Weak transcription	Ovary	ovary
42	chr14:69377000-69380200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:69377000-69380400	Weak transcription	Esophagus	oesophagus
44	chr14:69377000-69380800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr14:69377000-69382000	Weak transcription	Right Ventricle	heart
46	chr14:69377200-69380800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:69377200-69381800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:69377200-69386000	Weak transcription	Placenta	Placenta
49	chr14:69377200-69386200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:69377400-69379600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links