Variant report

Variant	rs72733528
Chromosome Location	chr14:69382434-69382435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69380500..69382470-chr14:69444271..69447694,3	MCF-7	breast:
2	chr14:69376851..69382793-chr14:69441155..69448781,14	MCF-7	breast:
3	chr14:69377931..69381978-chr14:69382009..69387098,5	MCF-7	breast:
4	chr14:69381386..69384151-chr14:69454672..69457482,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12588423	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2003746	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268975	0.80[AMR][1000 genomes]
rs2300876	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3742897	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784140	0.83[AMR][1000 genomes]
rs58747753	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72733527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72733532	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72733546	0.81[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
4	chr14:69348200-69389200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:69354000-69393200	Strong transcription	NHEK	skin
6	chr14:69354600-69393000	Strong transcription	Dnd41	blood
7	chr14:69360600-69388800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:69362600-69389200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:69367400-69382800	Strong transcription	Fetal Stomach	stomach
11	chr14:69369000-69391200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:69372600-69388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr14:69375000-69384600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:69376000-69383200	Weak transcription	Brain Anterior Caudate	brain
16	chr14:69376000-69385600	Weak transcription	K562	blood
17	chr14:69376000-69388600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:69376000-69389400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:69376000-69395400	Weak transcription	Brain Angular Gyrus	brain
20	chr14:69376200-69383200	Weak transcription	Fetal Brain Female	brain
21	chr14:69376200-69386200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:69376400-69383400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:69376400-69385800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:69376600-69392400	Weak transcription	Brain Germinal Matrix	brain
25	chr14:69376800-69383200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:69376800-69383400	Weak transcription	Spleen	Spleen
27	chr14:69377200-69386000	Weak transcription	Placenta	Placenta
28	chr14:69377200-69386200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:69377400-69383200	Weak transcription	Left Ventricle	heart
30	chr14:69377800-69383200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:69378200-69389200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:69378400-69383200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:69378400-69383400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:69378400-69383800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:69378800-69383000	Strong transcription	Fetal Intestine Small	intestine
36	chr14:69378800-69385600	Weak transcription	Fetal Thymus	thymus
37	chr14:69378800-69388400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr14:69378800-69394000	Weak transcription	Stomach Mucosa	stomach
39	chr14:69378800-69402400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69379000-69383200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:69379000-69383400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:69379000-69383600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:69379000-69384400	Weak transcription	Fetal Lung	lung
44	chr14:69379000-69385400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:69379000-69385600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:69379000-69386000	Weak transcription	Adipose Nuclei	Adipose
47	chr14:69379000-69386400	Weak transcription	Fetal Kidney	kidney
48	chr14:69379000-69387400	Weak transcription	Colonic Mucosa	Colon
49	chr14:69379000-69388400	Strong transcription	NH-A	brain
50	chr14:69379200-69383400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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