Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:151005525..151007235-chr3:151013467..151015003,2	MCF-7	breast:
2	chr3:151005161..151007217-chr3:151020047..151021890,2	MCF-7	breast:
3	chr3:151000556..151002534-chr3:151004666..151007655,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1463727	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1472121	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1873619	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2242353	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4146770	0.81[EUR][1000 genomes]
rs4679792	0.86[ASN][1000 genomes]
rs4680355	0.86[ASN][1000 genomes]
rs6440735	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6767266	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6803224	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6803841	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7622010	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623356	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs937124	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9845034	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9863821	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9863983	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9864095	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9864216	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9865758	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150999400-151011200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:151002000-151010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:151002000-151012000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:151002200-151009600	Weak transcription	HMEC	breast
7	chr3:151002200-151010800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:151002400-151018000	Weak transcription	NHLF	lung
9	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:151002800-151007800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:151002800-151010800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:151002800-151011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:151004400-151009600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:151005200-151014000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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