Variant report

Variant	rs9845034
Chromosome Location	chr3:151019719-151019720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151017110..151019943-chr3:151020802..151024030,3	MCF-7	breast:
2	chr3:151011307..151016157-chr3:151019117..151025599,7	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1463727	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1472121	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1873619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242353	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4146770	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4679792	0.93[ASN][1000 genomes]
rs4680355	0.93[ASN][1000 genomes]
rs58792455	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440735	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6767266	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6803224	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7622010	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937124	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9863821	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9863983	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9864095	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9864216	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9865758	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:151010200-151022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:151011400-151021800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:151011800-151021600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:151012400-151021600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:151012800-151021600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:151014400-151021800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:151014400-151022400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:151014400-151022600	Weak transcription	Esophagus	oesophagus
11	chr3:151015200-151021800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:151017000-151021600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:151017000-151022600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:151018000-151020000	Enhancers	NHLF	lung
15	chr3:151018200-151021600	Genic enhancers	HMEC	breast
16	chr3:151018200-151022000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:151019000-151020200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:151019000-151020800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:151019000-151022400	Genic enhancers	NHEK	skin
20	chr3:151019200-151020200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:151019200-151020200	Enhancers	Osteobl	bone
22	chr3:151019200-151021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:151019400-151020200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:151019400-151020200	Enhancers	NH-A	brain
25	chr3:151019400-151020200	Enhancers	NHDF-Ad	bronchial
26	chr3:151019400-151020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:151019400-151020600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr3:151019400-151020600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:151019400-151020800	Enhancers	Hela-S3	cervix

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