Variant report

Variant	rs58792694
Chromosome Location	chr6:79618728-79618729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25824603..25825305-chr6:79618552..79619197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151092	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17741785	0.84[AFR][1000 genomes]
rs7454053	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
3	chr6:79585200-79619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:79585200-79620200	Weak transcription	Fetal Lung	lung
5	chr6:79588000-79619800	Weak transcription	Fetal Brain Female	brain
6	chr6:79589600-79619800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:79589800-79620200	Weak transcription	Fetal Brain Male	brain
8	chr6:79592600-79620200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:79597000-79620000	Weak transcription	Fetal Kidney	kidney
10	chr6:79597400-79619800	Weak transcription	Ovary	ovary
11	chr6:79600200-79619600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:79604600-79619200	Weak transcription	Fetal Heart	heart
13	chr6:79605000-79619200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:79605200-79619800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:79606200-79620200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:79606400-79620200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:79606800-79620200	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:79607200-79619600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:79608000-79620200	Weak transcription	Brain Substantia Nigra	brain
20	chr6:79608400-79619000	Weak transcription	Fetal Thymus	thymus
21	chr6:79609000-79619000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:79609200-79619200	Weak transcription	Fetal Intestine Large	intestine
23	chr6:79609400-79619800	Weak transcription	Primary B cells from cord blood	blood
24	chr6:79609400-79619800	Weak transcription	Left Ventricle	heart
25	chr6:79609400-79620000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:79609400-79620200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:79610400-79619800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:79610600-79620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:79612600-79619800	Weak transcription	Pancreas	Pancrea
30	chr6:79613000-79620200	Weak transcription	Fetal Stomach	stomach
31	chr6:79613200-79619200	Weak transcription	Fetal Intestine Small	intestine
32	chr6:79614000-79620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:79614200-79618800	Weak transcription	HSMMtube	muscle
34	chr6:79614200-79619200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:79614200-79620000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:79614200-79620200	Weak transcription	NHLF	lung
37	chr6:79615400-79618800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr6:79615400-79619800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:79616600-79618800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:79616600-79619000	Weak transcription	HSMM	muscle
41	chr6:79617200-79619600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:79617400-79619800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:79618200-79619200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:79618200-79619400	Enhancers	HMEC	breast
45	chr6:79618200-79620000	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr6:79618200-79620000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:79618200-79620000	Enhancers	NHDF-Ad	bronchial
48	chr6:79618400-79618800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:79618400-79619800	Enhancers	NHEK	skin
50	chr6:79618400-79620200	Enhancers	Osteobl	bone

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