Variant report

Variant	rs17741785
Chromosome Location	chr6:79554272-79554273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2202658	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202663	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56159137	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58792694	0.84[AFR][1000 genomes]
rs66511207	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901136	1.00[ASN][1000 genomes]
rs72901148	1.00[ASN][1000 genomes]
rs72902825	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902895	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs7454053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738062	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751422	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443624	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9443633	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443636	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448576	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79553400-79558200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:79553600-79564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:79553800-79562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:79554200-79564200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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