Variant report

Variant	rs7738062
Chromosome Location	chr6:79581523-79581524
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79576198..79578688-chr6:79580398..79583072,2	K562	blood:
2	chr6:79576248..79579264-chr6:79581167..79583899,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146243	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17741785	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202658	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202663	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56159137	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901136	1.00[ASN][1000 genomes]
rs72901148	1.00[ASN][1000 genomes]
rs72902825	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902895	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7454053	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751422	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443624	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9443633	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443636	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448576	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448586	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448617	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79577800-79587200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:79577800-79587400	Weak transcription	Esophagus	oesophagus
3	chr6:79577800-79597200	Weak transcription	Gastric	stomach
4	chr6:79578200-79583000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:79578200-79583400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:79578200-79583400	Weak transcription	Colonic Mucosa	Colon
7	chr6:79578200-79586200	Weak transcription	Lung	lung
8	chr6:79578200-79586400	Weak transcription	Aorta	Aorta
9	chr6:79578200-79587000	Weak transcription	Fetal Thymus	thymus
10	chr6:79578200-79587200	Weak transcription	Thymus	Thymus
11	chr6:79578200-79587400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:79578200-79587400	Weak transcription	Pancreas	Pancrea
13	chr6:79578200-79589400	Weak transcription	Psoas Muscle	Psoas
14	chr6:79578200-79590800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:79578200-79592400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:79578200-79592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:79578200-79597800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:79578200-79608600	Weak transcription	Adipose Nuclei	Adipose
19	chr6:79578200-79608600	Weak transcription	Left Ventricle	heart
20	chr6:79578200-79613600	Weak transcription	HSMM	muscle
21	chr6:79578400-79582000	Weak transcription	Primary B cells from cord blood	blood
22	chr6:79578400-79584800	Weak transcription	Fetal Kidney	kidney
23	chr6:79578400-79585000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:79578400-79585200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:79578400-79585800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:79578400-79586800	Weak transcription	Brain Anterior Caudate	brain
27	chr6:79578400-79589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:79578400-79589400	Weak transcription	Fetal Brain Male	brain
29	chr6:79578400-79593400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:79578400-79613800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:79578400-79619800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:79578400-79620000	Weak transcription	Right Ventricle	heart
33	chr6:79578600-79581600	Weak transcription	Hela-S3	cervix
34	chr6:79578600-79582000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:79578600-79583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:79578600-79583200	Weak transcription	Brain Angular Gyrus	brain
37	chr6:79578600-79583600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr6:79578600-79583600	Weak transcription	Fetal Lung	lung
39	chr6:79578600-79584400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:79578600-79584600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:79578600-79585400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:79578600-79586200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:79578600-79586400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:79578600-79586400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:79578600-79586800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:79578600-79587400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:79578600-79593200	Weak transcription	NHEK	skin
48	chr6:79578600-79596000	Weak transcription	Fetal Heart	heart
49	chr6:79578600-79596600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:79578600-79598200	Weak transcription	HUVEC	blood vessel

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