Variant report

Variant	rs9443633
Chromosome Location	chr6:79680063-79680064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79670696..79672436-chr6:79680016..79682587,2	K562	blood:
2	chr6:79672073..79674100-chr6:79679412..79681765,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251969	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13437410	1.00[ASN][1000 genomes]
rs1415311	1.00[ASN][1000 genomes]
rs17741785	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17785485	1.00[ASN][1000 genomes]
rs2202658	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202663	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56097110	1.00[ASN][1000 genomes]
rs56159137	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890023	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890048	1.00[ASN][1000 genomes]
rs72890089	1.00[ASN][1000 genomes]
rs72891829	1.00[ASN][1000 genomes]
rs72901136	1.00[ASN][1000 genomes]
rs72901148	1.00[ASN][1000 genomes]
rs72902825	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902895	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7454053	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738062	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751422	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443624	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9443636	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448576	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9448586	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448617	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648000-79681200	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:79648800-79714400	Weak transcription	Gastric	stomach
3	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
4	chr6:79649600-79681400	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:79658600-79695000	Weak transcription	Pancreas	Pancrea
6	chr6:79658800-79681200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:79659200-79680600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:79659200-79681400	Strong transcription	Adipose Nuclei	Adipose
9	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
10	chr6:79659400-79680400	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:79659400-79680600	Strong transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:79659400-79681200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:79659400-79681200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:79659400-79681200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:79659400-79702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
17	chr6:79659600-79680600	Strong transcription	Primary T cells from cord blood	blood
18	chr6:79659600-79681000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:79659600-79681200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:79659600-79704000	Weak transcription	Lung	lung
21	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
22	chr6:79659800-79681200	Strong transcription	Fetal Thymus	thymus
23	chr6:79659800-79681400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr6:79659800-79681400	Strong transcription	Primary hematopoietic stem cells	blood
25	chr6:79659800-79681400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:79659800-79681400	Strong transcription	Liver	Liver
27	chr6:79659800-79681400	Strong transcription	Dnd41	blood
28	chr6:79659800-79684600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:79659800-79702600	Weak transcription	Right Ventricle	heart
30	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:79660000-79681400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:79660200-79681200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:79660200-79681200	Strong transcription	Primary B cells from cord blood	blood
36	chr6:79660600-79681200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr6:79661200-79681400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:79661800-79681200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:79662400-79681200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:79662400-79681400	Strong transcription	Fetal Intestine Large	intestine
41	chr6:79662800-79681400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:79663200-79681400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:79663200-79681400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:79663200-79687200	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:79664200-79695000	Weak transcription	Fetal Stomach	stomach
46	chr6:79664200-79698000	Weak transcription	Fetal Intestine Small	intestine
47	chr6:79664200-79702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:79666800-79681200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:79666800-79681200	Strong transcription	Placenta	Placenta
50	chr6:79667200-79681400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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