Variant report

Variant	rs13437410
Chromosome Location	chr6:79827148-79827149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79813406..79815631-chr6:79824618..79827244,2	MCF-7	breast:
2	chr6:79815142..79817932-chr6:79824976..79828157,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1415311	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17723508	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs17785485	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786528	1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56097110	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	1.00[ASN][1000 genomes]
rs72890022	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890023	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890048	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890085	0.91[EUR][1000 genomes]
rs72890089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72891829	1.00[ASN][1000 genomes]
rs72893703	1.00[ASN][1000 genomes]
rs72902825	1.00[ASN][1000 genomes]
rs72902838	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	1.00[ASN][1000 genomes]
rs72902895	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7751422	0.84[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443633	1.00[ASN][1000 genomes]
rs9443636	0.81[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	1.00[ASN][1000 genomes]
rs9448603	1.00[ASN][1000 genomes]
rs9448617	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79825800-79827200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:79827000-79827400	Weak transcription	H1 Cell Line	embryonic stem cell

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