Variant report
| Variant | rs72890048 |
|---|---|
| Chromosome Location | chr6:79827329-79827330 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:79815142..79817932-chr6:79824976..79828157,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13437410 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1415311 | 1.00[ASN][1000 genomes] |
| rs17723508 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17785485 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17786528 | 1.00[ASN][1000 genomes] |
| rs45463891 | 1.00[ASN][1000 genomes] |
| rs56097110 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66511207 | 1.00[ASN][1000 genomes] |
| rs72890022 | 0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72890023 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72890085 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72890089 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72891829 | 1.00[ASN][1000 genomes] |
| rs72893703 | 1.00[ASN][1000 genomes] |
| rs72902825 | 1.00[ASN][1000 genomes] |
| rs72902838 | 1.00[ASN][1000 genomes] |
| rs72902857 | 1.00[ASN][1000 genomes] |
| rs72902878 | 1.00[ASN][1000 genomes] |
| rs72902895 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72904839 | 1.00[ASN][1000 genomes] |
| rs72904869 | 1.00[ASN][1000 genomes] |
| rs72904885 | 1.00[ASN][1000 genomes] |
| rs7751422 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443633 | 1.00[ASN][1000 genomes] |
| rs9443636 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443640 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9448595 | 1.00[ASN][1000 genomes] |
| rs9448603 | 1.00[ASN][1000 genomes] |
| rs9448617 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9448624 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9688399 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830705 | chr6:79659297-79829530 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv830706 | chr6:79825910-79994878 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:79827000-79827400 | Weak transcription | H1 Cell Line | embryonic stem cell |
