Variant report

Variant	rs72902895
Chromosome Location	chr6:79715493-79715494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79712764..79715566-chr6:79719156..79721327,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13437410	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415311	1.00[ASN][1000 genomes]
rs17723508	0.81[EUR][1000 genomes]
rs17741785	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17785485	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202658	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202663	1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56097110	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56159137	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890022	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890023	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890048	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890085	0.83[EUR][1000 genomes]
rs72890089	1.00[ASN][1000 genomes]
rs72891829	1.00[ASN][1000 genomes]
rs72893703	1.00[ASN][1000 genomes]
rs72901136	1.00[ASN][1000 genomes]
rs72901148	1.00[ASN][1000 genomes]
rs72902825	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7454053	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738062	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751422	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443624	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.92[EUR][1000 genomes]
rs9443633	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443636	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448576	1.00[ASN][1000 genomes]
rs9448586	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448617	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687000-79715800	Strong transcription	Primary T cells fromperipheralblood	blood
2	chr6:79687000-79715800	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:79687200-79715600	Strong transcription	Primary B cells from cord blood	blood
6	chr6:79687200-79715600	Strong transcription	Fetal Thymus	thymus
7	chr6:79687200-79716000	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:79687200-79717600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:79687600-79718600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:79687600-79775000	Strong transcription	Dnd41	blood
13	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:79700400-79715800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:79704000-79737400	Weak transcription	Right Ventricle	heart
19	chr6:79704600-79730400	Weak transcription	Fetal Intestine Small	intestine
20	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:79705000-79738600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:79705200-79732800	Weak transcription	Lung	lung
23	chr6:79705800-79717400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:79706000-79719000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:79706000-79725200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:79706200-79715600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:79706600-79740000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:79707400-79731800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:79707400-79737400	Weak transcription	Spleen	Spleen
31	chr6:79707400-79740000	Weak transcription	Small Intestine	intestine
32	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
33	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
35	chr6:79707600-79717600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:79708200-79732800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:79708200-79741800	Weak transcription	A549	lung
39	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:79709000-79733600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:79709000-79737400	Weak transcription	Ovary	ovary
42	chr6:79709200-79724800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:79709200-79725600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:79709400-79726600	Weak transcription	Fetal Brain Male	brain
45	chr6:79710400-79716000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
47	chr6:79711400-79719600	Weak transcription	Brain Germinal Matrix	brain
48	chr6:79711800-79724800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr6:79711800-79732200	Weak transcription	NHEK	skin
50	chr6:79711800-79735000	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links