Variant report

Variant	rs9443624
Chromosome Location	chr6:79620276-79620277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17741785	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202658	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202663	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56159137	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890022	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890023	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901136	1.00[ASN][1000 genomes]
rs72901148	1.00[ASN][1000 genomes]
rs72902825	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902895	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7454053	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751422	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9443633	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443636	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448576	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9448586	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448617	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79619200-79620800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
2	chr6:79619200-79621600	Enhancers	Fetal Heart	heart
3	chr6:79619200-79625800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:79619800-79620400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:79619800-79620400	Bivalent Enhancer	Fetal Thymus	thymus
6	chr6:79619800-79620400	Enhancers	Gastric	stomach
7	chr6:79619800-79620600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:79619800-79620600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:79619800-79620600	Bivalent/Poised TSS	Colonic Mucosa	Colon
10	chr6:79619800-79620800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
11	chr6:79619800-79621000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:79619800-79621200	Enhancers	Spleen	Spleen
13	chr6:79619800-79621400	Flanking Active TSS	NHEK	skin
14	chr6:79620000-79620600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:79620000-79620600	Active TSS	Fetal Kidney	kidney
16	chr6:79620000-79620600	Active TSS	Right Ventricle	heart
17	chr6:79620000-79620800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:79620000-79620800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:79620000-79620800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
20	chr6:79620000-79620800	Active TSS	Brain Anterior Caudate	brain
21	chr6:79620000-79620800	Active TSS	Brain Cingulate Gyrus	brain
22	chr6:79620000-79620800	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:79620000-79620800	Active TSS	Fetal Intestine Large	intestine
24	chr6:79620000-79620800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:79620000-79621000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:79620000-79621000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:79620000-79621000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:79620000-79621000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr6:79620000-79621000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:79620000-79621000	Active TSS	Brain Angular Gyrus	brain
31	chr6:79620000-79621000	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr6:79620000-79621000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
33	chr6:79620000-79621000	Flanking Active TSS	HUVEC	blood vessel
34	chr6:79620000-79621200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr6:79620000-79621200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr6:79620000-79621200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:79620200-79620400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:79620200-79620400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:79620200-79620400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:79620200-79620400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
41	chr6:79620200-79620400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
42	chr6:79620200-79620400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:79620200-79620400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:79620200-79620400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:79620200-79620400	Flanking Active TSS	Liver	Liver
46	chr6:79620200-79620400	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr6:79620200-79620400	Active TSS	Fetal Muscle Leg	muscle
48	chr6:79620200-79620400	Active TSS	Placenta	Placenta
49	chr6:79620200-79620400	Active TSS	Fetal Stomach	stomach
50	chr6:79620200-79620400	Active TSS	Rectal Mucosa Donor 29	rectum

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