Variant report

Variant	rs72890023
Chromosome Location	chr6:79805269-79805270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79787411..79789921-chr6:79804255..79806973,2	MCF-7	breast:
2	chr6:79802468..79803976-chr6:79804321..79807213,2	K562	blood:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13437410	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415311	1.00[ASN][1000 genomes]
rs17723508	0.84[EUR][1000 genomes]
rs17785485	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17786528	1.00[ASN][1000 genomes]
rs45463891	1.00[ASN][1000 genomes]
rs56097110	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66511207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890022	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890048	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890085	0.83[EUR][1000 genomes]
rs72890089	1.00[ASN][1000 genomes]
rs72891829	1.00[ASN][1000 genomes]
rs72893703	1.00[ASN][1000 genomes]
rs72902825	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902838	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902857	1.00[ASN][1000 genomes]
rs72902878	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72902895	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904839	1.00[ASN][1000 genomes]
rs72904869	1.00[ASN][1000 genomes]
rs72904885	1.00[ASN][1000 genomes]
rs7751422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443624	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443631	0.92[EUR][1000 genomes]
rs9443633	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443636	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443640	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448595	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448603	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448617	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9448624	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688399	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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