Variant report
Variant | rs58798360 |
---|---|
Chromosome Location | chr7:7537035-7537036 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10085771 | 0.84[EUR][1000 genomes] |
rs10085830 | 0.85[EUR][1000 genomes] |
rs10225403 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10226811 | 0.86[EUR][1000 genomes] |
rs10229355 | 0.88[EUR][1000 genomes] |
rs10234561 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10234818 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10236946 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10244711 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10246954 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10247676 | 0.88[EUR][1000 genomes] |
rs10250746 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10250756 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10250860 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs10255201 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10257694 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs10263223 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10263962 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10268438 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs10269244 | 0.85[EUR][1000 genomes] |
rs10280546 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1029571 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10486160 | 0.82[AMR][1000 genomes] |
rs10486161 | 0.87[EUR][1000 genomes] |
rs10486163 | 0.82[EUR][1000 genomes] |
rs10486165 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs10486166 | 0.86[EUR][1000 genomes] |
rs10486168 | 0.90[EUR][1000 genomes] |
rs10486171 | 0.88[EUR][1000 genomes] |
rs10486173 | 0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10486175 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10486176 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11772657 | 0.95[ASN][1000 genomes] |
rs11977826 | 0.81[EUR][1000 genomes] |
rs11980579 | 0.81[EUR][1000 genomes] |
rs12666561 | 0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12668945 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs16878046 | 0.83[EUR][1000 genomes] |
rs16878052 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs16878062 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs16878455 | 0.88[EUR][1000 genomes] |
rs17167624 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17167690 | 0.82[EUR][1000 genomes] |
rs17167804 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17168096 | 0.86[EUR][1000 genomes] |
rs17168127 | 0.87[EUR][1000 genomes] |
rs17168144 | 0.90[EUR][1000 genomes] |
rs17168145 | 0.90[EUR][1000 genomes] |
rs17168152 | 0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17168215 | 0.90[EUR][1000 genomes] |
rs17168217 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs17168290 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs17168295 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17168350 | 0.83[EUR][1000 genomes] |
rs17168365 | 0.83[EUR][1000 genomes] |
rs17168367 | 0.83[EUR][1000 genomes] |
rs17168368 | 0.83[EUR][1000 genomes] |
rs17168369 | 0.83[EUR][1000 genomes] |
rs17510752 | 0.83[EUR][1000 genomes] |
rs1860725 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1997518 | 0.81[EUR][1000 genomes] |
rs2108065 | 0.91[EUR][1000 genomes] |
rs2109772 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2158755 | 0.84[ASN][1000 genomes] |
rs2286839 | 0.82[EUR][1000 genomes] |
rs28399265 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs28493883 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs28498082 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs28505765 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs28753676 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35462098 | 0.81[EUR][1000 genomes] |
rs35591002 | 0.81[EUR][1000 genomes] |
rs4320465 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4543457 | 0.86[EUR][1000 genomes] |
rs55657147 | 0.90[EUR][1000 genomes] |
rs55798422 | 0.86[EUR][1000 genomes] |
rs55827101 | 0.86[EUR][1000 genomes] |
rs55841745 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs55924331 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs55980077 | 0.86[EUR][1000 genomes] |
rs56022797 | 0.85[EUR][1000 genomes] |
rs56084871 | 0.86[EUR][1000 genomes] |
rs56220786 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs56330916 | 0.86[EUR][1000 genomes] |
rs56677263 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs57090364 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs57172214 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs57521604 | 0.90[EUR][1000 genomes] |
rs57930817 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs58324484 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs59521144 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs60020853 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs60120688 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs60668247 | 0.87[EUR][1000 genomes] |
rs60958181 | 0.87[EUR][1000 genomes] |
rs60977515 | 0.87[EUR][1000 genomes] |
rs61221982 | 0.82[EUR][1000 genomes] |
rs61543470 | 0.90[EUR][1000 genomes] |
rs61744397 | 0.81[EUR][1000 genomes] |
rs6463692 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6945969 | 0.90[EUR][1000 genomes] |
rs6946064 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6946913 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6947175 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6948300 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6949534 | 0.84[EUR][1000 genomes] |
rs6957099 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6957880 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6960158 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6962455 | 0.86[EUR][1000 genomes] |
rs6963106 | 0.86[EUR][1000 genomes] |
rs6964749 | 0.90[EUR][1000 genomes] |
rs6965546 | 0.87[EUR][1000 genomes] |
rs6967835 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6968394 | 0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6971367 | 0.86[EUR][1000 genomes] |
rs6971414 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6971456 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6972142 | 0.86[EUR][1000 genomes] |
rs6975571 | 0.86[EUR][1000 genomes] |
rs725933 | 0.81[EUR][1000 genomes] |
rs725934 | 0.84[EUR][1000 genomes] |
rs73334107 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs73340632 | 0.80[EUR][1000 genomes] |
rs73346316 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs73346330 | 0.86[EUR][1000 genomes] |
rs73674580 | 0.91[EUR][1000 genomes] |
rs7459128 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7778212 | 0.82[EUR][1000 genomes] |
rs7780426 | 0.86[EUR][1000 genomes] |
rs7780713 | 0.82[EUR][1000 genomes] |
rs7789255 | 0.84[EUR][1000 genomes] |
rs7798119 | 0.83[EUR][1000 genomes] |
rs7804915 | 0.85[EUR][1000 genomes] |
rs7807121 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs929378 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs929379 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs972766 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869091 | chr7:6927461-7567820 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
2 | nsv949293 | chr7:6990891-7711883 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
3 | nsv1030246 | chr7:7053923-7569633 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
4 | nsv1019498 | chr7:7053923-7668373 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
5 | nsv538721 | chr7:7053923-7668373 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
6 | nsv1026758 | chr7:7187491-8075259 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
7 | nsv887470 | chr7:7310023-7655094 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
8 | nsv887472 | chr7:7405069-7680697 | Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
9 | nsv606042 | chr7:7427535-7876466 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
10 | nsv606043 | chr7:7473563-7571420 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
11 | nsv887473 | chr7:7497676-7604913 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
12 | nsv1027872 | chr7:7516124-7600842 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
13 | nsv1024107 | chr7:7516124-7601638 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
14 | nsv887474 | chr7:7519603-7679644 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
15 | nsv887475 | chr7:7519603-7679644 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
16 | nsv887476 | chr7:7519603-7680697 | Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
17 | nsv887477 | chr7:7531819-7810122 | Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
18 | nsv1032670 | chr7:7535515-8017077 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:7528000-7545600 | Weak transcription | Placenta | Placenta |
2 | chr7:7528600-7575400 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
3 | chr7:7529000-7557600 | Weak transcription | Pancreas | Pancrea |
4 | chr7:7531800-7537400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
5 | chr7:7531800-7539200 | Weak transcription | HepG2 | liver |
6 | chr7:7533200-7537200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
7 | chr7:7533800-7537600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
8 | chr7:7533800-7541000 | Weak transcription | NHDF-Ad | bronchial |
9 | chr7:7533800-7544600 | Weak transcription | Muscle Satellite Cultured Cells | -- |
10 | chr7:7536000-7537200 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |