Variant report

Variant	rs6946913
Chromosome Location	chr7:7531006-7531007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7528603..7532505-chr7:7533349..7536188,3	K562	blood:
2	chr7:7531005..7532947-chr7:7534688..7536787,2	K562	blood:
3	chr7:7530006..7532448-chr7:7539748..7541894,2	MCF-7	breast:
4	chr7:7521873..7525191-chr7:7530979..7533379,3	MCF-7	breast:

Extended variants
information (count: 181 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10085771	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10085830	0.87[EUR][1000 genomes]
rs10225403	0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10226811	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10229355	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10234554	1.00[JPT][hapmap]
rs10234561	1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10234818	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10236946	0.88[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10244711	0.90[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10246954	0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1024715	0.90[JPT][hapmap]
rs10247676	0.82[CEU][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10250746	0.82[CEU][hapmap];0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10250756	0.82[CEU][hapmap];0.88[CHB][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10250860	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10255201	1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10257694	0.86[CHD][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10263223	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10263962	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10268438	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10269244	0.87[EUR][1000 genomes]
rs10280546	0.82[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1029571	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10486160	0.83[ASN][1000 genomes]
rs10486161	0.80[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10486163	0.80[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486165	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10486166	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486168	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10486171	0.82[CEU][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486173	0.82[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10486175	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10486176	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11772657	0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11982762	1.00[JPT][hapmap]
rs12666561	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12668945	0.82[CEU][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1294597	1.00[TSI][hapmap]
rs1294598	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1294603	0.88[TSI][hapmap]
rs1297791	0.90[JPT][hapmap]
rs13307616	1.00[TSI][hapmap]
rs13438316	0.81[CEU][hapmap]
rs16878046	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16878052	0.88[CHB][hapmap];0.86[CHD][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16878062	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16878455	0.91[CEU][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs17151547	0.80[MEX][hapmap];1.00[TSI][hapmap]
rs17167312	1.00[TSI][hapmap]
rs17167323	1.00[TSI][hapmap]
rs17167601	0.80[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs17167624	0.88[CHB][hapmap];0.90[CHD][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17167625	0.80[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs17167690	0.85[EUR][1000 genomes]
rs17167804	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17167922	1.00[JPT][hapmap]
rs17168096	0.82[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17168127	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17168144	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17168145	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17168152	0.82[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17168215	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17168217	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168290	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17168295	0.91[CEU][hapmap];0.81[CHD][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17168350	0.91[CEU][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs17168365	0.81[EUR][1000 genomes]
rs17168367	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17168368	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs17168369	0.91[CEU][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs17510752	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1860725	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997518	0.84[EUR][1000 genomes]
rs2108065	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2109772	0.88[CHB][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2158755	0.87[ASN][1000 genomes]
rs2286839	0.80[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2348046	0.90[JPT][hapmap]
rs28399265	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28493883	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28498082	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28505765	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28753676	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35462098	0.84[EUR][1000 genomes]
rs3757528	0.82[CEU][hapmap];0.92[TSI][hapmap]
rs3779375	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs4320465	0.91[CEU][hapmap];0.81[CHD][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4455736	0.90[JPT][hapmap]
rs4543457	0.82[CEU][hapmap];0.88[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55657147	0.93[EUR][1000 genomes]
rs55798422	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55827101	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55841745	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55924331	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55980077	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56022797	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56084871	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56103225	0.81[EUR][1000 genomes]
rs56177814	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56220786	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56330916	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56677263	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57090364	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57172214	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57521604	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57930817	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58324484	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58798360	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59521144	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60020853	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60120688	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60314248	0.83[ASN][1000 genomes]
rs60668247	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60958181	0.85[EUR][1000 genomes]
rs60977515	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61221982	0.85[EUR][1000 genomes]
rs61543470	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6463692	0.82[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6463694	1.00[JPT][hapmap]
rs6463695	1.00[JPT][hapmap]
rs6945969	0.82[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6946064	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6947175	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948300	0.91[CEU][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6948753	0.82[ASN][1000 genomes]
rs6949534	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6952195	1.00[JPT][hapmap]
rs6955328	0.82[CEU][hapmap]
rs6957099	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6957880	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6960158	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6962455	0.82[CEU][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6963106	0.82[CEU][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6964749	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6965546	0.82[CEU][hapmap];0.81[CHD][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6966601	0.81[CEU][hapmap]
rs6967835	0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968394	0.81[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971367	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6971414	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6971456	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6972069	1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap]
rs6972142	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6975571	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6977661	1.00[TSI][hapmap]
rs725933	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs725934	0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73334107	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73346316	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73346330	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73674580	0.88[EUR][1000 genomes]
rs7459128	0.91[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7778212	0.81[CEU][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780426	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780713	0.85[EUR][1000 genomes]
rs7789255	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7793675	0.81[CEU][hapmap]
rs7798119	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs7800860	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7804915	0.87[EUR][1000 genomes]
rs7807121	0.91[CEU][hapmap];0.86[CHD][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs929378	0.91[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs929379	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972766	0.91[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
7	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv606043	chr7:7473563-7571420	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv887473	chr7:7497676-7604913	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1027872	chr7:7516124-7600842	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1024107	chr7:7516124-7601638	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv887474	chr7:7519603-7679644	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv887475	chr7:7519603-7679644	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv887476	chr7:7519603-7680697	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6946913	MIOS	cis	parietal	SCAN
rs6946913	COL28A1	cis	cerebellum	SCAN
rs6946913	COL28A1	cis	parietal	SCAN
rs6946913	MIOS	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7528000-7531400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:7528000-7545600	Weak transcription	Placenta	Placenta
3	chr7:7528600-7575400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:7528800-7531200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:7528800-7532200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:7529000-7532000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:7529000-7532200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:7529000-7532200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:7529000-7557600	Weak transcription	Pancreas	Pancrea
10	chr7:7529200-7531400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:7529200-7531400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:7529200-7531800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:7529200-7532200	Enhancers	HSMM	muscle
14	chr7:7529200-7533600	Enhancers	Hela-S3	cervix
15	chr7:7529400-7531800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:7529400-7532200	Enhancers	NHDF-Ad	bronchial
17	chr7:7529400-7533800	Enhancers	Osteobl	bone
18	chr7:7529800-7531200	Weak transcription	Fetal Intestine Small	intestine
19	chr7:7529800-7531200	Weak transcription	HepG2	liver
20	chr7:7529800-7533800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr7:7530400-7531200	Weak transcription	A549	lung
22	chr7:7530400-7532800	Weak transcription	HMEC	breast
23	chr7:7530600-7531800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr7:7530800-7531200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:7530800-7531200	Enhancers	HSMMtube	muscle
26	chr7:7530800-7532200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:7531000-7531600	Enhancers	NHLF	lung

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