Variant report

Variant	rs6955328
Chromosome Location	chr7:7500081-7500082
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7492127..7496167-chr7:7498814..7501004,3	K562	blood:

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10085830	0.84[CEU][hapmap]
rs10225403	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs10226811	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10229355	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10234561	0.91[CEU][hapmap];0.83[AMR][1000 genomes]
rs10236946	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs10244711	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs10246954	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs10247676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10250746	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs10250756	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10250860	0.83[ASN][1000 genomes]
rs10255190	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10255201	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10257694	0.91[CEU][hapmap]
rs10263223	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs10280546	0.91[CEU][hapmap]
rs1029571	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10486160	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10486161	0.91[CEU][hapmap];0.94[AMR][1000 genomes]
rs10486163	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10486165	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486166	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486168	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486173	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs10486175	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10486176	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs11772657	0.86[CHB][hapmap]
rs11977826	0.92[CEU][hapmap]
rs12666561	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12668945	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs12702613	0.84[CEU][hapmap]
rs1294597	0.91[CEU][hapmap]
rs1294598	0.84[CEU][hapmap]
rs1294599	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs1294603	0.84[CEU][hapmap]
rs1296103	0.82[AMR][1000 genomes]
rs13307616	0.91[CEU][hapmap]
rs13438316	0.81[CEU][hapmap]
rs16878046	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16878052	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes]
rs16878062	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16878455	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs17151541	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17151547	0.91[CEU][hapmap];0.85[CHB][hapmap];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17167312	0.91[CEU][hapmap]
rs17167323	0.91[CEU][hapmap]
rs17167601	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17167624	0.91[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes]
rs17167625	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17167690	0.84[CEU][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17167804	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs17168096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17168127	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17168144	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17168145	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17168152	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17168215	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17168217	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17168290	0.92[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes]
rs17168295	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17168350	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs17168367	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs17168368	0.92[CEU][hapmap]
rs17168369	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs17510752	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs1997518	0.84[CEU][hapmap]
rs2108065	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2109772	0.92[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2286839	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28399265	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28505765	0.85[AMR][1000 genomes]
rs34889595	0.92[AMR][1000 genomes]
rs3757528	0.82[CEU][hapmap]
rs3779375	0.91[CEU][hapmap]
rs4320465	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4543457	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55657147	0.85[AMR][1000 genomes]
rs55798422	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55827101	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55841745	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55924331	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55980077	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56022797	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56084871	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56103225	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56177814	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56220786	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56330916	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56677263	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57090364	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57172214	0.81[EUR][1000 genomes]
rs57521604	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58324484	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59521144	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs60314248	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60668247	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60977515	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61037288	0.92[ASN][1000 genomes]
rs61221982	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61543470	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6463692	0.91[CEU][hapmap]
rs6945969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6946064	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs6946913	0.82[CEU][hapmap]
rs6947175	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs6948300	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6949534	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6957099	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs6957880	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6960158	0.82[EUR][1000 genomes]
rs6962455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6963106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6964749	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6965546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6966601	0.83[CEU][hapmap]
rs6967835	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs6968394	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs6971367	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6971414	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6971456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6972142	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6975571	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6977661	0.91[CEU][hapmap]
rs725934	0.91[CEU][hapmap]
rs73346316	0.80[EUR][1000 genomes]
rs73346330	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73674580	0.83[EUR][1000 genomes]
rs7459128	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7778212	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7780426	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7780713	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7789255	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7793675	0.84[CEU][hapmap]
rs7798119	0.92[CEU][hapmap];0.89[CHB][hapmap]
rs7804915	0.81[AMR][1000 genomes]
rs7807121	0.91[CEU][hapmap]
rs929378	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs929379	0.82[AMR][1000 genomes]
rs972766	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv606043	chr7:7473563-7571420	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv887473	chr7:7497676-7604913	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7485000-7500600	Weak transcription	Pancreas	Pancrea
2	chr7:7490400-7513800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:7492000-7502800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:7499600-7501000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:7500000-7502000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links