Variant report

Variant	rs13438316
Chromosome Location	chr7:7657967-7657968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7655938..7658869-chr7:7680457..7682421,2	K562	blood:

Variant related genes	Relation type
ENSG00000106399	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10236714	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10244711	0.89[CEU][hapmap]
rs10247676	0.81[CEU][hapmap]
rs10250746	0.81[CEU][hapmap]
rs10250756	0.81[CEU][hapmap]
rs10250880	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486166	0.81[CEU][hapmap]
rs10486168	0.81[CEU][hapmap]
rs10486171	0.81[CEU][hapmap]
rs10486173	0.81[CEU][hapmap]
rs10486175	0.90[CEU][hapmap]
rs10486176	0.90[CEU][hapmap]
rs11772656	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12668945	0.81[CEU][hapmap]
rs1557996	1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs16878455	0.90[CEU][hapmap]
rs17168096	0.81[CEU][hapmap]
rs17168152	0.81[CEU][hapmap]
rs17168217	0.81[CEU][hapmap]
rs17168290	0.90[CEU][hapmap]
rs17168295	0.90[CEU][hapmap]
rs17168350	0.90[CEU][hapmap]
rs17168367	0.90[CEU][hapmap]
rs17168368	0.90[CEU][hapmap]
rs17168369	0.90[CEU][hapmap]
rs17510752	0.90[CEU][hapmap]
rs2051911	0.97[ASN][1000 genomes]
rs2079387	0.84[ASN][1000 genomes]
rs2108065	0.90[CEU][hapmap]
rs28579471	0.81[EUR][1000 genomes]
rs2881867	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34567266	0.81[EUR][1000 genomes]
rs3757528	0.81[CEU][hapmap]
rs3779375	0.90[CEU][hapmap]
rs3807857	0.82[JPT][hapmap]
rs4320465	0.90[CEU][hapmap]
rs4543457	0.81[CEU][hapmap]
rs4725006	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55769451	0.88[EUR][1000 genomes]
rs6945969	0.81[CEU][hapmap]
rs6946913	0.81[CEU][hapmap]
rs6948086	0.97[ASN][1000 genomes]
rs6948300	0.90[CEU][hapmap]
rs6955328	0.81[CEU][hapmap]
rs6957880	0.81[CEU][hapmap]
rs6962455	0.81[CEU][hapmap]
rs6963106	0.81[CEU][hapmap]
rs6965546	0.81[CEU][hapmap]
rs6966601	0.80[CEU][hapmap]
rs6968394	0.80[CEU][hapmap]
rs6971456	0.81[CEU][hapmap]
rs73340632	0.89[EUR][1000 genomes]
rs73340693	0.88[EUR][1000 genomes]
rs7459128	0.90[CEU][hapmap]
rs7777893	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778212	0.80[CEU][hapmap]
rs7781543	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782245	0.89[CEU][hapmap]
rs7788388	0.81[CEU][hapmap]
rs7793675	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798119	0.90[CEU][hapmap]
rs7801325	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7807121	0.90[CEU][hapmap]
rs929378	0.90[CEU][hapmap]
rs972766	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv887474	chr7:7519603-7679644	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv887475	chr7:7519603-7679644	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv887476	chr7:7519603-7680697	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv887477	chr7:7531819-7810122	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
12	nsv8043	chr7:7589195-7862802	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
13	nsv1034199	chr7:7617835-7691176	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv606044	chr7:7652372-7727101	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7637600-7658000	Weak transcription	Fetal Intestine Small	intestine
2	chr7:7639800-7674600	Weak transcription	A549	lung
3	chr7:7648600-7660200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:7649000-7679000	Weak transcription	HSMM	muscle
5	chr7:7657400-7658400	Enhancers	Dnd41	blood
6	chr7:7657400-7658400	Enhancers	K562	blood
7	chr7:7657800-7658000	Enhancers	Primary T helper cells PMA-I stimulated	--

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