Variant report

Variant	rs34889595
Chromosome Location	chr7:7456771-7456772
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:7391197..7393340-chr7:7455899..7457673,2	MCF-7	breast:
2	chr7:7456425..7458799-chr7:7459595..7461119,2	K562	blood:
3	chr7:7456758..7459628-chr7:7464929..7467571,2	K562	blood:

Variant related genes	Relation type
ENSG00000215018	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10085771	0.86[EUR][1000 genomes]
rs10085830	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10226811	0.83[EUR][1000 genomes]
rs10229355	0.80[EUR][1000 genomes]
rs10234561	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10234818	0.83[EUR][1000 genomes]
rs10247676	0.80[EUR][1000 genomes]
rs10248825	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10255190	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10255201	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10268438	0.86[EUR][1000 genomes]
rs10269244	0.87[EUR][1000 genomes]
rs10280546	0.83[EUR][1000 genomes]
rs1029571	0.88[AMR][1000 genomes]
rs10486160	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486161	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10486163	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10486165	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10486166	0.90[AMR][1000 genomes]
rs10486168	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10486171	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10486175	0.88[AMR][1000 genomes]
rs10486176	0.82[AMR][1000 genomes]
rs12666561	0.86[AMR][1000 genomes]
rs12668945	0.84[AMR][1000 genomes]
rs12702613	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1294597	0.99[EUR][1000 genomes]
rs1294598	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1294599	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1294601	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1294602	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1294603	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1296103	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13227277	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13230547	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13307616	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16878046	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16878052	0.83[AMR][1000 genomes]
rs16878062	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17151541	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17151547	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17167312	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17167323	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17167601	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17167624	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17167625	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17167690	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17168096	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17168127	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17168144	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17168145	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17168152	0.86[AMR][1000 genomes]
rs17168215	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17168217	0.81[AMR][1000 genomes]
rs17168290	0.82[AMR][1000 genomes]
rs17168295	0.88[AMR][1000 genomes]
rs17168350	0.84[AMR][1000 genomes]
rs17168365	0.84[AMR][1000 genomes]
rs17168367	0.84[AMR][1000 genomes]
rs17168368	0.80[AMR][1000 genomes]
rs17168369	0.84[AMR][1000 genomes]
rs17510752	0.84[AMR][1000 genomes]
rs1860725	0.86[EUR][1000 genomes]
rs1997518	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2109772	0.80[AMR][1000 genomes]
rs2286839	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28399265	0.80[EUR][1000 genomes]
rs28493883	0.83[EUR][1000 genomes]
rs28505765	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28669774	0.97[EUR][1000 genomes]
rs35462098	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4320465	0.83[AMR][1000 genomes]
rs4543457	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55657147	0.85[AMR][1000 genomes]
rs55798422	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55827101	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55841745	0.88[AMR][1000 genomes]
rs55924331	0.88[AMR][1000 genomes]
rs55980077	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56022797	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56084871	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56103225	0.84[AMR][1000 genomes]
rs56177814	0.86[AMR][1000 genomes]
rs56220786	0.81[AMR][1000 genomes]
rs56330916	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57090364	0.86[AMR][1000 genomes]
rs57521604	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57930817	0.83[EUR][1000 genomes]
rs58324484	0.81[AMR][1000 genomes]
rs59521144	0.86[AMR][1000 genomes]
rs60020853	0.86[EUR][1000 genomes]
rs60120688	0.86[EUR][1000 genomes]
rs60314248	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60668247	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60977515	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61221982	0.92[AMR][1000 genomes]
rs61543470	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6463692	0.81[EUR][1000 genomes]
rs6945969	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6946064	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6947175	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6948300	0.81[EUR][1000 genomes]
rs6949534	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6953394	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6955328	0.92[AMR][1000 genomes]
rs6960158	0.82[EUR][1000 genomes]
rs6962455	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6963106	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6964749	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6965546	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6971367	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6971414	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6971456	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6972142	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6975571	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6977661	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979055	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs725933	0.84[EUR][1000 genomes]
rs725934	0.86[EUR][1000 genomes]
rs73334107	0.84[EUR][1000 genomes]
rs73346330	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7459128	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7778212	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7780426	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7780713	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7789255	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7798119	0.84[AMR][1000 genomes]
rs7804915	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7812265	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929378	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs929379	0.82[AMR][1000 genomes]
rs972766	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023133	chr7:6854098-7516700	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv869091	chr7:6927461-7567820	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949293	chr7:6990891-7711883	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1032813	chr7:7053923-7497484	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv1030246	chr7:7053923-7569633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv1019498	chr7:7053923-7668373	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv538721	chr7:7053923-7668373	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	esv2758102	chr7:7209911-7493901	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv2759505	chr7:7209911-7493901	Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv887470	chr7:7310023-7655094	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
12	nsv606039	chr7:7317590-7497676	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1020988	chr7:7348251-7497484	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv887472	chr7:7405069-7680697	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
15	nsv606042	chr7:7427535-7876466	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
16	nsv1020181	chr7:7448657-7484862	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7447800-7463800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:7447800-7464200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:7451200-7464000	Weak transcription	Gastric	stomach
4	chr7:7452800-7457000	Enhancers	Fetal Intestine Small	intestine
5	chr7:7453600-7457000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr7:7454400-7464200	Weak transcription	Small Intestine	intestine
7	chr7:7455000-7457000	Enhancers	Stomach Mucosa	stomach
8	chr7:7455000-7458000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:7455200-7478600	Weak transcription	Pancreas	Pancrea
10	chr7:7455600-7457000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr7:7455600-7457000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:7455600-7457000	Enhancers	Fetal Lung	lung
13	chr7:7455800-7457000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr7:7456000-7456800	Enhancers	Primary T cells from cord blood	blood
15	chr7:7456000-7457200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:7456000-7458200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr7:7456200-7457000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:7456200-7464200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:7456400-7457400	Weak transcription	Primary B cells from cord blood	blood
20	chr7:7456400-7457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:7456400-7459200	Weak transcription	Fetal Intestine Large	intestine
22	chr7:7456400-7461000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr7:7456600-7457000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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