Variant report
Variant | rs12702613 |
---|---|
Chromosome Location | chr7:7446680-7446681 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10085771 | 0.87[EUR][1000 genomes] |
rs10085830 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10225403 | 0.91[CEU][hapmap] |
rs10226811 | 0.84[EUR][1000 genomes] |
rs10229355 | 0.81[EUR][1000 genomes] |
rs10234561 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs10234818 | 0.85[EUR][1000 genomes] |
rs10236946 | 1.00[CEU][hapmap] |
rs10246954 | 0.91[CEU][hapmap] |
rs10247676 | 0.91[CEU][hapmap];0.81[EUR][1000 genomes] |
rs10248825 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10250746 | 0.84[CEU][hapmap] |
rs10250756 | 0.84[CEU][hapmap] |
rs10255190 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10255201 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10257694 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs10263223 | 0.91[CEU][hapmap] |
rs10268438 | 0.87[EUR][1000 genomes] |
rs10269244 | 0.88[EUR][1000 genomes] |
rs10280546 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
rs10486160 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs10486161 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rs10486163 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs10486165 | 0.91[CEU][hapmap];0.88[EUR][1000 genomes] |
rs10486166 | 0.84[CEU][hapmap] |
rs10486168 | 0.84[CEU][hapmap];0.83[EUR][1000 genomes] |
rs10486171 | 0.84[CEU][hapmap];0.81[EUR][1000 genomes] |
rs10486173 | 0.84[CEU][hapmap] |
rs12668945 | 0.84[CEU][hapmap] |
rs1294597 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1294598 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1294599 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1294601 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1294602 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1294603 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1296103 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13227277 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13230547 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13307616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16878046 | 0.91[CEU][hapmap];0.89[EUR][1000 genomes] |
rs16878052 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs16878062 | 0.88[EUR][1000 genomes] |
rs16878455 | 0.81[CEU][hapmap] |
rs17151541 | 0.96[EUR][1000 genomes] |
rs17151547 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
rs17167312 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs17167323 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17167601 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
rs17167624 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
rs17167625 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
rs17167690 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs17167804 | 0.91[CEU][hapmap] |
rs17168096 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes] |
rs17168127 | 0.85[EUR][1000 genomes] |
rs17168144 | 0.83[EUR][1000 genomes] |
rs17168145 | 0.83[EUR][1000 genomes] |
rs17168152 | 0.84[CEU][hapmap] |
rs17168215 | 0.83[EUR][1000 genomes] |
rs17168217 | 0.84[CEU][hapmap] |
rs17168295 | 0.81[CEU][hapmap] |
rs17168350 | 0.81[CEU][hapmap] |
rs17168369 | 0.81[CEU][hapmap] |
rs1860725 | 0.87[EUR][1000 genomes] |
rs1997518 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2109772 | 0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs2286839 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs28399265 | 0.81[EUR][1000 genomes] |
rs28493883 | 0.85[EUR][1000 genomes] |
rs28505765 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs28669774 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs34889595 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs35462098 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs3779375 | 0.81[CEU][hapmap] |
rs4320465 | 0.81[CEU][hapmap] |
rs4543457 | 0.84[CEU][hapmap];0.87[EUR][1000 genomes] |
rs55798422 | 0.87[EUR][1000 genomes] |
rs55827101 | 0.87[EUR][1000 genomes] |
rs55980077 | 0.87[EUR][1000 genomes] |
rs56022797 | 0.85[EUR][1000 genomes] |
rs56084871 | 0.87[EUR][1000 genomes] |
rs56330916 | 0.87[EUR][1000 genomes] |
rs57521604 | 0.83[EUR][1000 genomes] |
rs57930817 | 0.85[EUR][1000 genomes] |
rs58324484 | 0.81[EUR][1000 genomes] |
rs60020853 | 0.87[EUR][1000 genomes] |
rs60120688 | 0.87[EUR][1000 genomes] |
rs60314248 | 0.82[EUR][1000 genomes] |
rs60668247 | 0.85[EUR][1000 genomes] |
rs60977515 | 0.85[EUR][1000 genomes] |
rs61543470 | 0.83[EUR][1000 genomes] |
rs6463692 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
rs6945969 | 0.84[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6946064 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rs6947175 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rs6948300 | 0.83[EUR][1000 genomes] |
rs6949534 | 0.88[EUR][1000 genomes] |
rs6953394 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6955328 | 0.84[CEU][hapmap] |
rs6957099 | 0.91[CEU][hapmap] |
rs6957880 | 0.91[CEU][hapmap] |
rs6960158 | 0.83[EUR][1000 genomes] |
rs6962455 | 0.91[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6963106 | 0.91[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6964749 | 0.83[EUR][1000 genomes] |
rs6965546 | 0.91[CEU][hapmap];0.85[EUR][1000 genomes] |
rs6967835 | 0.91[CEU][hapmap] |
rs6968394 | 0.83[CEU][hapmap] |
rs6971367 | 0.87[EUR][1000 genomes] |
rs6971414 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6971456 | 0.84[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6972142 | 0.87[EUR][1000 genomes] |
rs6975571 | 0.87[EUR][1000 genomes] |
rs6977661 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6979055 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs725933 | 0.85[EUR][1000 genomes] |
rs725934 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
rs73334107 | 0.86[EUR][1000 genomes] |
rs73346330 | 0.87[EUR][1000 genomes] |
rs7459128 | 0.81[CEU][hapmap];0.81[EUR][1000 genomes] |
rs7778212 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs7780426 | 0.87[EUR][1000 genomes] |
rs7780713 | 0.90[EUR][1000 genomes] |
rs7789255 | 0.88[EUR][1000 genomes] |
rs7804915 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7807121 | 0.81[CEU][hapmap] |
rs7812265 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs929378 | 0.81[EUR][1000 genomes] |
rs972766 | 0.81[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1023133 | chr7:6854098-7516700 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
2 | nsv869091 | chr7:6927461-7567820 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
3 | nsv949293 | chr7:6990891-7711883 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
4 | nsv1032813 | chr7:7053923-7497484 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
5 | nsv1030246 | chr7:7053923-7569633 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
6 | nsv1019498 | chr7:7053923-7668373 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
7 | nsv538721 | chr7:7053923-7668373 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
8 | nsv1026758 | chr7:7187491-8075259 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
9 | esv2758102 | chr7:7209911-7493901 | Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
10 | esv2759505 | chr7:7209911-7493901 | Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
11 | nsv469770 | chr7:7261414-7453821 | Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
12 | nsv887470 | chr7:7310023-7655094 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
13 | nsv606039 | chr7:7317590-7497676 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
14 | nsv1020988 | chr7:7348251-7497484 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
15 | nsv887472 | chr7:7405069-7680697 | Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
16 | nsv606042 | chr7:7427535-7876466 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:7444600-7448000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
2 | chr7:7445800-7447600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr7:7446200-7447600 | Weak transcription | Stomach Mucosa | stomach |
4 | chr7:7446600-7447600 | Weak transcription | NHEK | skin |