Variant report

Variant	rs58807047
Chromosome Location	chr6:38339961-38339962
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38338839..38342583-chr6:38344309..38347723,4	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1983605	0.84[EUR][1000 genomes]
rs2294739	0.95[EUR][1000 genomes]
rs4140443	0.86[EUR][1000 genomes]
rs4711538	0.95[EUR][1000 genomes]
rs4711540	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4711541	0.87[EUR][1000 genomes]
rs4711543	0.86[EUR][1000 genomes]
rs4711544	0.87[EUR][1000 genomes]
rs4711546	0.84[EUR][1000 genomes]
rs4714149	0.83[EUR][1000 genomes]
rs4714151	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4714152	0.85[EUR][1000 genomes]
rs4714153	0.87[EUR][1000 genomes]
rs4714155	0.87[EUR][1000 genomes]
rs4714156	0.87[EUR][1000 genomes]
rs4714157	0.83[EUR][1000 genomes]
rs4714158	0.86[EUR][1000 genomes]
rs58424668	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903060	0.83[EUR][1000 genomes]
rs6903611	0.86[EUR][1000 genomes]
rs6903767	0.86[EUR][1000 genomes]
rs6923701	0.84[EUR][1000 genomes]
rs742515	0.84[EUR][1000 genomes]
rs7743023	0.87[EUR][1000 genomes]
rs7748599	0.85[EUR][1000 genomes]
rs7749685	0.84[EUR][1000 genomes]
rs7756267	0.87[EUR][1000 genomes]
rs7759078	0.87[EUR][1000 genomes]
rs7759629	0.83[EUR][1000 genomes]
rs7764502	0.86[EUR][1000 genomes]
rs7766214	0.85[EUR][1000 genomes]
rs9296248	0.87[EUR][1000 genomes]
rs9296249	0.86[EUR][1000 genomes]
rs9349076	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9349077	0.88[EUR][1000 genomes]
rs9349078	0.84[EUR][1000 genomes]
rs9349079	0.84[EUR][1000 genomes]
rs9357269	0.87[EUR][1000 genomes]
rs9357270	0.87[EUR][1000 genomes]
rs9357271	0.86[EUR][1000 genomes]
rs9357272	0.83[EUR][1000 genomes]
rs9366957	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9366959	0.86[EUR][1000 genomes]
rs9366960	0.86[EUR][1000 genomes]
rs9369055	0.87[EUR][1000 genomes]
rs9369057	0.88[EUR][1000 genomes]
rs9380740	0.94[EUR][1000 genomes]
rs9380741	0.87[EUR][1000 genomes]
rs9380742	0.86[EUR][1000 genomes]
rs9380743	0.85[EUR][1000 genomes]
rs9380745	0.82[AMR][1000 genomes]
rs9380747	0.86[EUR][1000 genomes]
rs9394493	0.87[EUR][1000 genomes]
rs9394494	0.87[EUR][1000 genomes]
rs9470865	0.87[EUR][1000 genomes]
rs9470867	0.87[EUR][1000 genomes]
rs9470868	0.86[EUR][1000 genomes]
rs9470874	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022724	chr6:38332368-38454527	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38333600-38342400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:38337800-38340000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:38338200-38341400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:38338400-38340000	Enhancers	Fetal Stomach	stomach
5	chr6:38338600-38340800	Enhancers	Ovary	ovary
6	chr6:38338800-38340000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:38338800-38341400	Enhancers	NHDF-Ad	bronchial
8	chr6:38339200-38340000	Enhancers	HSMMtube	muscle
9	chr6:38339200-38340400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:38339400-38340000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:38339400-38340400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:38339400-38340600	Weak transcription	Fetal Kidney	kidney
13	chr6:38339400-38340800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:38339400-38342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:38339400-38342400	Weak transcription	Brain Substantia Nigra	brain
16	chr6:38339400-38342400	Weak transcription	Psoas Muscle	Psoas
17	chr6:38339400-38342400	Weak transcription	Right Atrium	heart
18	chr6:38339400-38342400	Weak transcription	Right Ventricle	heart
19	chr6:38339400-38348200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:38339600-38340000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:38339600-38340800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:38339600-38342400	Weak transcription	Adipose Nuclei	Adipose

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