Variant report

Variant	rs9366957
Chromosome Location	chr6:38327713-38327714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:38322182..38323734-chr6:38327632..38329404,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1983605	0.82[EUR][1000 genomes]
rs2294739	0.95[EUR][1000 genomes]
rs4140443	0.84[EUR][1000 genomes]
rs4711538	0.95[EUR][1000 genomes]
rs4711540	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4711541	0.84[EUR][1000 genomes]
rs4711543	0.84[EUR][1000 genomes]
rs4711544	0.85[EUR][1000 genomes]
rs4711546	0.82[EUR][1000 genomes]
rs4714149	0.86[EUR][1000 genomes]
rs4714151	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4714152	0.82[EUR][1000 genomes]
rs4714153	0.85[EUR][1000 genomes]
rs4714155	0.85[EUR][1000 genomes]
rs4714156	0.85[EUR][1000 genomes]
rs4714157	0.81[EUR][1000 genomes]
rs4714158	0.83[EUR][1000 genomes]
rs58424668	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58807047	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6903060	0.81[EUR][1000 genomes]
rs6903611	0.83[EUR][1000 genomes]
rs6903767	0.83[EUR][1000 genomes]
rs6923701	0.81[EUR][1000 genomes]
rs742515	0.82[EUR][1000 genomes]
rs7743023	0.85[EUR][1000 genomes]
rs7748599	0.82[EUR][1000 genomes]
rs7749685	0.82[EUR][1000 genomes]
rs7756267	0.84[EUR][1000 genomes]
rs7759078	0.85[EUR][1000 genomes]
rs7759629	0.81[EUR][1000 genomes]
rs7764502	0.84[EUR][1000 genomes]
rs7766214	0.82[EUR][1000 genomes]
rs9296248	0.84[EUR][1000 genomes]
rs9296249	0.84[EUR][1000 genomes]
rs9349076	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9349077	0.85[EUR][1000 genomes]
rs9349078	0.81[EUR][1000 genomes]
rs9349079	0.81[EUR][1000 genomes]
rs9357269	0.84[EUR][1000 genomes]
rs9357270	0.84[EUR][1000 genomes]
rs9357271	0.84[EUR][1000 genomes]
rs9357272	0.81[EUR][1000 genomes]
rs9366959	0.84[EUR][1000 genomes]
rs9366960	0.84[EUR][1000 genomes]
rs9369055	0.84[EUR][1000 genomes]
rs9369057	0.85[EUR][1000 genomes]
rs9380740	0.94[EUR][1000 genomes]
rs9380741	0.85[EUR][1000 genomes]
rs9380742	0.84[EUR][1000 genomes]
rs9380743	0.82[EUR][1000 genomes]
rs9380745	0.82[AMR][1000 genomes]
rs9380747	0.83[EUR][1000 genomes]
rs9394493	0.85[EUR][1000 genomes]
rs9394494	0.85[EUR][1000 genomes]
rs9470865	0.85[EUR][1000 genomes]
rs9470867	0.84[EUR][1000 genomes]
rs9470868	0.84[EUR][1000 genomes]
rs9470874	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv602957	chr6:38305770-38395874	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1032358	chr6:38323745-38415855	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38285000-38327800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:38313800-38331200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38315800-38339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:38319200-38334200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:38323200-38328800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:38323200-38331800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:38323600-38330400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:38325400-38327800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:38326200-38328400	Weak transcription	Fetal Stomach	stomach
10	chr6:38326200-38331000	Weak transcription	Right Atrium	heart
11	chr6:38326200-38331800	Weak transcription	Lung	lung
12	chr6:38326200-38338600	Weak transcription	Ovary	ovary
13	chr6:38326400-38332000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:38326400-38337200	Weak transcription	Psoas Muscle	Psoas
15	chr6:38326600-38331800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:38326600-38332400	Weak transcription	HSMMtube	muscle
17	chr6:38327200-38331200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:38327400-38331600	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:38327400-38338600	Weak transcription	Left Ventricle	heart

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