Variant report

Variant	rs5880837
Chromosome Location	chr6:149745668-149745669
allele	-/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149379361..149382289-chr6:149745014..149748004,4	MCF-7	breast:
2	chr6:149745176..149748304-chr6:149748732..149751749,4	MCF-7	breast:
3	chr6:149740980..149743677-chr6:149744800..149747765,2	K562	blood:
4	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
5	chr6:149352125..149354322-chr6:149744702..149746498,2	MCF-7	breast:
6	chr6:149348466..149350718-chr6:149745093..149747617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149744000-149746800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:149744600-149746400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:149744800-149745800	Enhancers	Fetal Stomach	stomach
5	chr6:149745200-149746800	Enhancers	Placenta	Placenta
6	chr6:149745400-149745800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:149745400-149746200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:149745400-149746200	Weak transcription	Lung	lung
9	chr6:149745400-149746800	Weak transcription	Fetal Heart	heart
10	chr6:149745400-149748600	Weak transcription	HSMMtube	muscle
11	chr6:149745400-149750400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:149745600-149745800	Bivalent Enhancer	HepG2	liver
13	chr6:149745600-149746600	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:149745600-149746600	Enhancers	Brain Hippocampus Middle	brain
15	chr6:149745600-149747000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:149745600-149749000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:149745600-149750200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:149745600-149752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:149745600-149752800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:149745600-149752800	Weak transcription	HSMM	muscle
21	chr6:149745600-149753000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:149745600-149753000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:149745600-149753000	Weak transcription	Fetal Muscle Leg	muscle

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