Variant report

Variant	rs58813384
Chromosome Location	chr6:106527182-106527183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106524677..106527761-chr6:106528087..106531603,5	K562	blood:
2	chr6:106511817..106514767-chr6:106525243..106527594,2	K562	blood:
3	chr6:106525524..106527475-chr6:106529699..106532511,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4555967	0.94[ASN][1000 genomes]
rs4945741	0.98[ASN][1000 genomes]
rs58670852	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925611	0.98[ASN][1000 genomes]
rs7747748	0.98[ASN][1000 genomes]
rs9373831	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384598	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398061	0.94[ASN][1000 genomes]
rs9398062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106518000-106530000	Weak transcription	NHEK	skin
2	chr6:106518600-106530400	Strong transcription	Fetal Intestine Small	intestine
3	chr6:106519000-106528000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:106524600-106527200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:106525000-106527800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:106525400-106530400	Weak transcription	NH-A	brain
7	chr6:106525400-106530600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:106525600-106529200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:106525600-106530600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:106525600-106530800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:106525800-106528400	Strong transcription	Fetal Intestine Large	intestine
12	chr6:106526000-106529600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:106526000-106529800	Weak transcription	NHDF-Ad	bronchial
14	chr6:106526000-106530600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:106526200-106529800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:106526200-106529800	Weak transcription	NHLF	lung
17	chr6:106526400-106527800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:106526400-106528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:106526400-106530800	Weak transcription	A549	lung
20	chr6:106526600-106527200	Weak transcription	K562	blood
21	chr6:106526600-106527600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:106526600-106529800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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