Variant report

Variant	rs9398060
Chromosome Location	chr6:106517377-106517378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106517286..106519528-chr6:106532468..106534648,2	K562	blood:

Variant related genes	Relation type
ENSG00000057657	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010273	0.89[JPT][hapmap]
rs4555967	0.94[ASN][1000 genomes]
rs4945741	0.98[ASN][1000 genomes]
rs4946725	0.88[JPT][hapmap]
rs58670852	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58813384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925611	0.98[ASN][1000 genomes]
rs7747748	0.98[ASN][1000 genomes]
rs9373831	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9384595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9384597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384598	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9386507	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9398061	0.94[ASN][1000 genomes]
rs9398062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106512200-106517400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:106512600-106517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:106512800-106517400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:106512800-106517400	Weak transcription	HSMM	muscle
5	chr6:106512800-106517400	Weak transcription	NHEK	skin
6	chr6:106513000-106517400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:106513000-106517400	Weak transcription	NHLF	lung
8	chr6:106513000-106517600	Weak transcription	HSMMtube	muscle
9	chr6:106514800-106519400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:106515600-106517400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:106515600-106517400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:106515600-106517400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:106515600-106517400	Weak transcription	Osteobl	bone
14	chr6:106515600-106517600	Weak transcription	NHDF-Ad	bronchial
15	chr6:106516400-106518200	Genic enhancers	Fetal Intestine Large	intestine
16	chr6:106516600-106518200	Enhancers	Fetal Heart	heart
17	chr6:106516800-106517800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:106516800-106518000	Genic enhancers	Fetal Intestine Small	intestine
19	chr6:106517200-106517800	Enhancers	HMEC	breast
20	chr6:106517200-106518000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:106517200-106518000	Enhancers	NH-A	brain

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