Variant report

Variant	rs58825872
Chromosome Location	chr18:45481488-45481489
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10502889	0.95[AMR][1000 genomes]
rs16958575	0.95[AMR][1000 genomes]
rs16958579	0.95[AMR][1000 genomes]
rs16958590	0.95[AMR][1000 genomes]
rs16958602	0.91[AMR][1000 genomes]
rs16958610	0.95[AMR][1000 genomes]
rs16958629	0.95[AMR][1000 genomes]
rs3813069	0.95[AMR][1000 genomes]
rs4939676	0.95[AMR][1000 genomes]
rs57631119	0.93[AMR][1000 genomes]
rs58060476	0.95[AMR][1000 genomes]
rs58573997	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45478000-45490800	Weak transcription	Pancreas	Pancrea
2	chr18:45478600-45482000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr18:45478800-45481800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:45480000-45481800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr18:45480000-45485200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:45480400-45481600	Weak transcription	Spleen	Spleen
7	chr18:45480400-45481800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:45480400-45483000	Weak transcription	Aorta	Aorta
9	chr18:45480400-45494000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:45480600-45482200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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