Variant report

Variant	rs16958590
Chromosome Location	chr18:45413553-45413554
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45412211..45417305-chr18:45454331..45458060,5	MCF-7	breast:
2	chr18:45412259..45415200-chr18:45419567..45423866,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10502889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958509	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs16958575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16958579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16958602	1.00[CEU][hapmap];0.96[AMR][1000 genomes]
rs16958610	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958629	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3813069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4939676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57631119	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58060476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58573997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58825872	0.95[AMR][1000 genomes]
rs8085335	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap]
rs8086227	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs8098413	0.88[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs9304357	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
2	chr18:45384200-45421200	Weak transcription	Gastric	stomach
3	chr18:45384200-45423000	Weak transcription	Lung	lung
4	chr18:45384400-45419600	Weak transcription	K562	blood
5	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
6	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
7	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
8	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
10	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
11	chr18:45390600-45419600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr18:45391000-45418400	Weak transcription	HUVEC	blood vessel
13	chr18:45391200-45416400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:45394600-45414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:45395400-45420800	Weak transcription	Fetal Brain Female	brain
16	chr18:45396000-45418800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr18:45397000-45430600	Weak transcription	Brain Angular Gyrus	brain
18	chr18:45398200-45420400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr18:45398400-45414400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr18:45399200-45420600	Weak transcription	Pancreas	Pancrea
21	chr18:45399600-45413600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr18:45399600-45419000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr18:45400400-45432200	Weak transcription	Ovary	ovary
24	chr18:45400600-45424600	Weak transcription	Stomach Mucosa	stomach
25	chr18:45401200-45426000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:45401400-45420600	Weak transcription	Brain Anterior Caudate	brain
27	chr18:45401400-45424600	Weak transcription	Brain Hippocampus Middle	brain
28	chr18:45401600-45421400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr18:45401600-45423400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:45403800-45422200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr18:45404800-45417800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr18:45404800-45418000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr18:45405200-45423400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr18:45406800-45414000	Strong transcription	Fetal Thymus	thymus
35	chr18:45407400-45420600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:45407600-45421000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr18:45407800-45420000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr18:45408400-45414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr18:45408400-45415400	Weak transcription	Fetal Lung	lung
40	chr18:45408800-45420400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr18:45408800-45420400	Weak transcription	Left Ventricle	heart
42	chr18:45408800-45423000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr18:45409000-45417400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr18:45409000-45420400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr18:45409000-45420400	Weak transcription	Small Intestine	intestine
46	chr18:45409000-45420600	Weak transcription	Fetal Stomach	stomach
47	chr18:45409200-45413600	Weak transcription	HepG2	liver
48	chr18:45409200-45413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr18:45409200-45417400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr18:45409200-45426400	Weak transcription	Fetal Kidney	kidney

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