Variant report

Variant	rs8085335
Chromosome Location	chr18:45363289-45363290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45356981..45361316-chr18:45361915..45364794,4	K562	blood:
2	chr18:45356981..45360648-chr18:45361915..45364207,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10502889	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap]
rs11663262	0.87[CEU][hapmap]
rs16958509	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs16958575	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs16958579	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs16958590	0.94[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap]
rs16958610	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs16958629	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs28441495	0.86[AFR][1000 genomes]
rs28821510	0.81[AFR][1000 genomes]
rs3813069	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4939632	0.81[ASN][1000 genomes]
rs4939972	0.81[ASN][1000 genomes]
rs58137461	0.86[ASN][1000 genomes]
rs8086227	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8098413	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9304357	0.89[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs9956201	0.81[LWK][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45335400-45365600	Weak transcription	Gastric	stomach
2	chr18:45340400-45369400	Weak transcription	Fetal Stomach	stomach
3	chr18:45341000-45364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr18:45342200-45384200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:45342400-45365400	Weak transcription	Psoas Muscle	Psoas
6	chr18:45344000-45373000	Weak transcription	Pancreas	Pancrea
7	chr18:45344200-45364800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr18:45344200-45364800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr18:45344400-45365400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:45344400-45365600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr18:45344600-45365400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:45344600-45368000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:45345000-45368000	Weak transcription	Colon Smooth Muscle	Colon
14	chr18:45345200-45365400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:45345400-45363400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr18:45346400-45365600	Weak transcription	Esophagus	oesophagus
18	chr18:45347600-45381800	Weak transcription	Right Ventricle	heart
19	chr18:45348200-45366200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr18:45348400-45365600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr18:45348400-45365600	Weak transcription	NHEK	skin
22	chr18:45349800-45365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr18:45350000-45364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr18:45350000-45365400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr18:45350400-45364000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr18:45350800-45365000	Weak transcription	Brain Hippocampus Middle	brain
27	chr18:45350800-45365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr18:45350800-45367600	Weak transcription	K562	blood
29	chr18:45351000-45365600	Weak transcription	Brain Substantia Nigra	brain
30	chr18:45351000-45374600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr18:45351600-45365800	Weak transcription	Brain Anterior Caudate	brain
32	chr18:45351800-45367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr18:45352000-45364600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr18:45352000-45365400	Weak transcription	Lung	lung
35	chr18:45352400-45365400	Weak transcription	Left Ventricle	heart
36	chr18:45352400-45365600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr18:45352800-45365000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr18:45353000-45381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr18:45353200-45365600	Weak transcription	Fetal Brain Female	brain
40	chr18:45353200-45365600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr18:45353800-45365400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr18:45354000-45364200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr18:45354200-45365000	Weak transcription	Thymus	Thymus
44	chr18:45354200-45365400	Weak transcription	NH-A	brain
45	chr18:45354600-45365600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr18:45354600-45381800	Weak transcription	Fetal Intestine Small	intestine
47	chr18:45354800-45365600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr18:45354800-45370800	Weak transcription	Fetal Brain Male	brain
49	chr18:45355000-45368800	Weak transcription	Brain Germinal Matrix	brain
50	chr18:45355400-45365400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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