Variant report

Variant	rs58829990
Chromosome Location	chr15:58819953-58819954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58818144..58821107-chr15:58827941..58830725,2	K562	blood:
2	chr15:58815957..58817851-chr15:58819397..58821378,2	MCF-7	breast:
3	chr15:58819426..58821702-chr15:58824237..58826443,2	K562	blood:
4	chr15:58819551..58822537-chr15:58827877..58830479,4	MCF-7	breast:
5	chr15:58816638..58820223-chr15:58821126..58823355,3	K562	blood:
6	chr15:58814659..58816490-chr15:58819397..58821413,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2414584	1.00[EUR][1000 genomes]
rs41292496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59288334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59630303	1.00[EUR][1000 genomes]
rs61583131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412744	1.00[EUR][1000 genomes]
rs73422649	1.00[EUR][1000 genomes]
rs73422655	1.00[EUR][1000 genomes]
rs73424700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426704	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426709	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58807800-58820200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:58815200-58820000	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:58815400-58820000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:58815400-58820800	Weak transcription	Spleen	Spleen
5	chr15:58815600-58820800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:58815600-58821000	Weak transcription	NHEK	skin
7	chr15:58815800-58820000	Weak transcription	Psoas Muscle	Psoas
8	chr15:58816000-58820200	Enhancers	A549	lung
9	chr15:58816200-58820000	Enhancers	Liver	Liver
10	chr15:58817400-58820000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr15:58817600-58820000	Enhancers	HepG2	liver
12	chr15:58817600-58821600	Enhancers	Right Ventricle	heart
13	chr15:58817600-58822000	Enhancers	Pancreas	Pancrea
14	chr15:58818000-58821400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:58818000-58821400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:58818000-58825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:58818200-58821200	Enhancers	Left Ventricle	heart
18	chr15:58818200-58821600	Enhancers	Right Atrium	heart
19	chr15:58818400-58821600	Enhancers	Adipose Nuclei	Adipose
20	chr15:58818600-58821200	Enhancers	Gastric	stomach
21	chr15:58818600-58822600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:58818800-58820000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:58818800-58821000	Weak transcription	Aorta	Aorta
24	chr15:58819000-58820800	Enhancers	Fetal Intestine Large	intestine
25	chr15:58819000-58821000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:58819000-58821000	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr15:58819000-58821600	Enhancers	Stomach Mucosa	stomach
28	chr15:58819200-58820400	Enhancers	Fetal Intestine Small	intestine
29	chr15:58819200-58821400	Enhancers	Duodenum Mucosa	Duodenum
30	chr15:58819200-58821400	Enhancers	Placenta	Placenta
31	chr15:58819200-58821400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr15:58819400-58821000	Enhancers	Lung	lung
33	chr15:58819400-58821200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:58819600-58820400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr15:58819600-58821200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:58819600-58821200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:58819600-58821200	Enhancers	Fetal Kidney	kidney
38	chr15:58819600-58821400	Enhancers	Ovary	ovary
39	chr15:58819600-58821600	Enhancers	Brain Substantia Nigra	brain
40	chr15:58819600-58821600	Enhancers	Fetal Muscle Leg	muscle
41	chr15:58819800-58820200	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr15:58819800-58820600	Enhancers	Fetal Stomach	stomach
43	chr15:58819800-58820800	Weak transcription	Esophagus	oesophagus
44	chr15:58819800-58820800	Enhancers	Fetal Heart	heart
45	chr15:58819800-58821200	Enhancers	NHDF-Ad	bronchial
46	chr15:58819800-58821400	Enhancers	Hela-S3	cervix

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