Variant report

Variant	rs58830158
Chromosome Location	chr4:110586296-110586297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1053680	0.95[AFR][1000 genomes]
rs57247132	1.00[AMR][1000 genomes]
rs59905504	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60182255	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60632814	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6833699	0.84[AFR][1000 genomes]
rs72886507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900761	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900779	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv508303	chr4:110579305-110604452	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
2	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
3	chr4:110573200-110588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:110574000-110586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:110574200-110587400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:110574200-110587600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:110574200-110592600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:110574200-110598400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:110576600-110589200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:110577400-110587000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:110579200-110608400	Weak transcription	Ovary	ovary
12	chr4:110580000-110587600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:110580200-110588200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr4:110581200-110587000	Weak transcription	Placenta	Placenta
15	chr4:110581400-110587800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:110581600-110596800	Weak transcription	Lung	lung
17	chr4:110583000-110587000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:110583000-110587800	Enhancers	Fetal Brain Male	brain
19	chr4:110583000-110596600	Weak transcription	HepG2	liver
20	chr4:110583400-110586600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:110583600-110586600	Weak transcription	Spleen	Spleen
22	chr4:110583600-110587000	Weak transcription	Fetal Brain Female	brain
23	chr4:110583600-110605600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:110584200-110589200	Weak transcription	Brain Substantia Nigra	brain
25	chr4:110584200-110591800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:110584200-110606000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:110584400-110586400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr4:110584400-110591400	Weak transcription	GM12878-XiMat	blood
29	chr4:110584400-110608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:110584600-110589800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:110585000-110587800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:110585000-110592600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:110585200-110588200	Weak transcription	HSMM	muscle
34	chr4:110585200-110596800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:110585200-110599600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr4:110585400-110586800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:110585400-110587000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:110585400-110591800	Weak transcription	Thymus	Thymus
39	chr4:110585600-110587000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr4:110585800-110588200	Genic enhancers	Primary T cells from cord blood	blood
41	chr4:110585800-110590200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:110585800-110591600	Weak transcription	Primary B cells from cord blood	blood
43	chr4:110585800-110591600	Weak transcription	Dnd41	blood
44	chr4:110585800-110608800	Weak transcription	Adipose Nuclei	Adipose
45	chr4:110586000-110586600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:110586000-110586800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr4:110586000-110590600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:110586000-110591600	Weak transcription	Fetal Thymus	thymus
49	chr4:110586000-110599800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:110586000-110605200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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