Variant report

Variant	rs72886507
Chromosome Location	chr4:110575397-110575398
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1053680	0.89[AFR][1000 genomes]
rs57247132	1.00[AMR][1000 genomes]
rs58830158	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59905504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60182255	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60632814	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886546	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900761	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900779	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110546600-110580600	Weak transcription	Thymus	Thymus
2	chr4:110565800-110576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110570400-110582000	Weak transcription	HSMM	muscle
4	chr4:110571000-110605400	Weak transcription	Left Ventricle	heart
5	chr4:110572600-110576800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:110572600-110623200	Weak transcription	Esophagus	oesophagus
7	chr4:110573200-110588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:110574000-110586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:110574200-110576000	Weak transcription	Primary B cells from cord blood	blood
10	chr4:110574200-110576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:110574200-110576200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:110574200-110576200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr4:110574200-110576200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:110574200-110576800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:110574200-110580200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:110574200-110580400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:110574200-110580400	Weak transcription	Fetal Thymus	thymus
18	chr4:110574200-110581000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:110574200-110583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:110574200-110583200	Weak transcription	Dnd41	blood
21	chr4:110574200-110587400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:110574200-110587600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:110574200-110592600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:110574200-110598400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:110574400-110575400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:110574400-110576200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr4:110574400-110581400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:110574600-110576800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:110574600-110580800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr4:110574600-110584800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:110574800-110576200	Weak transcription	Primary T cells from cord blood	blood
32	chr4:110574800-110576200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:110574800-110576200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr4:110574800-110581200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:110574800-110585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links