Variant report

Variant	rs58833221
Chromosome Location	chr16:65141403-65141404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11861237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1402018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17432264	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17432731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17510660	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17510891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4967870	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56706484	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58793156	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7187376	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7188625	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7189108	0.84[AMR][1000 genomes]
rs7189623	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7404236	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs970281	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
8	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
10	chr16:65130200-65147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:65133600-65141800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr16:65134200-65148600	Weak transcription	HMEC	breast
13	chr16:65135400-65143600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:65136800-65141600	Weak transcription	NH-A	brain
15	chr16:65136800-65144600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr16:65137000-65141800	Weak transcription	Spleen	Spleen
17	chr16:65137000-65147400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:65137200-65141600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:65138200-65142200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:65139400-65144200	Strong transcription	Osteobl	bone
21	chr16:65139400-65144400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr16:65139600-65142200	Strong transcription	HSMM	muscle
23	chr16:65139600-65144000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr16:65139600-65148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr16:65139800-65147400	Weak transcription	Brain Hippocampus Middle	brain
26	chr16:65140200-65144400	Strong transcription	Fetal Lung	lung
27	chr16:65140400-65150200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr16:65140600-65141600	Enhancers	Fetal Muscle Leg	muscle
29	chr16:65140600-65141600	Enhancers	Fetal Stomach	stomach
30	chr16:65140600-65147400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr16:65140800-65141600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr16:65140800-65141800	Enhancers	Brain Anterior Caudate	brain
33	chr16:65140800-65142200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr16:65141000-65142800	Weak transcription	Ovary	ovary
35	chr16:65141000-65144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr16:65141200-65141600	Weak transcription	NHDF-Ad	bronchial
37	chr16:65141200-65141800	Enhancers	Brain Germinal Matrix	brain
38	chr16:65141200-65141800	Enhancers	Left Ventricle	heart
39	chr16:65141200-65143400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:65141200-65150000	Weak transcription	Colon Smooth Muscle	Colon
41	chr16:65141200-65150200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr16:65141400-65142200	Strong transcription	HSMMtube	muscle
43	chr16:65141400-65142200	Strong transcription	NHLF	lung
44	chr16:65141400-65145200	Weak transcription	Fetal Brain Male	brain
45	chr16:65141400-65148200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr16:65141400-65149400	Weak transcription	Fetal Intestine Small	intestine

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