Variant report

Variant	rs7187376
Chromosome Location	chr16:65136495-65136496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:65134846..65136786-chr16:65138250..65139943,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11861237	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1402018	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17432264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432731	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17510660	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17510891	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4967870	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56706484	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58793156	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58833221	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7188625	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7189108	0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs7189623	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7404236	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs970281	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:65113600-65138800	Weak transcription	Fetal Muscle Leg	muscle
7	chr16:65113800-65140400	Weak transcription	Fetal Brain Male	brain
8	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:65116400-65136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:65117400-65141000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:65118400-65138400	Weak transcription	Fetal Stomach	stomach
12	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
13	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr16:65124400-65139200	Weak transcription	NHLF	lung
15	chr16:65126600-65140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
17	chr16:65130200-65147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:65132600-65137000	Strong transcription	Fetal Lung	lung
19	chr16:65132600-65139400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:65133200-65136800	Strong transcription	NH-A	brain
21	chr16:65133600-65141800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:65133800-65139000	Weak transcription	HSMMtube	muscle
23	chr16:65133800-65139800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr16:65134000-65136600	Weak transcription	NHDF-Ad	bronchial
25	chr16:65134000-65138000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr16:65134200-65140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr16:65134200-65148600	Weak transcription	HMEC	breast
28	chr16:65135000-65136600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:65135000-65137200	Strong transcription	HSMM	muscle
30	chr16:65135200-65137200	Strong transcription	Osteobl	bone
31	chr16:65135400-65136600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:65135400-65139600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr16:65135400-65143600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr16:65135600-65136600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:65135800-65138400	Weak transcription	Brain Hippocampus Middle	brain
36	chr16:65136200-65137200	Genic enhancers	Ovary	ovary
37	chr16:65136400-65136800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:65136400-65137000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr16:65136400-65137000	Enhancers	Spleen	Spleen

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