Variant report

Variant	rs58837225
Chromosome Location	chr6:166966355-166966356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166964236..166966556-chr6:166978667..166980857,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55731457	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55830943	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57559140	1.00[AMR][1000 genomes]
rs73788047	1.00[AMR][1000 genomes]
rs7775422	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166935400-166966400	Weak transcription	NH-A	brain
2	chr6:166947400-166969400	Weak transcription	Aorta	Aorta
3	chr6:166952400-166969000	Weak transcription	Psoas Muscle	Psoas
4	chr6:166953400-166967400	Weak transcription	Fetal Lung	lung
5	chr6:166955000-166967000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:166955200-166970600	Weak transcription	Pancreas	Pancrea
7	chr6:166955200-166970600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:166956000-166966400	Weak transcription	Adipose Nuclei	Adipose
9	chr6:166956000-166966600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:166956000-166967800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:166956000-166969000	Weak transcription	Gastric	stomach
12	chr6:166956200-166967400	Weak transcription	Ovary	ovary
13	chr6:166956400-166966400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:166956600-166966400	Weak transcription	HMEC	breast
15	chr6:166956800-166966600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:166957000-166967200	Weak transcription	HUVEC	blood vessel
17	chr6:166957000-166967400	Weak transcription	Right Atrium	heart
18	chr6:166957200-166968000	Weak transcription	Spleen	Spleen
19	chr6:166957800-166968800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:166960000-166972800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:166960400-166966400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:166961200-166966400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:166961200-166970400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:166963400-166966400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:166963400-166968600	Weak transcription	Esophagus	oesophagus
26	chr6:166964200-166967400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:166964600-166966400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr6:166964800-166966400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:166964800-166966400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr6:166964800-166966600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:166964800-166966800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr6:166964800-166968600	Enhancers	Brain Germinal Matrix	brain
33	chr6:166964800-166972000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:166965000-166966400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:166965000-166966400	Weak transcription	NHLF	lung
36	chr6:166965000-166967200	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:166965000-166967400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:166965000-166969200	Enhancers	Fetal Brain Male	brain
39	chr6:166965200-166967200	Enhancers	Fetal Muscle Trunk	muscle
40	chr6:166965400-166966600	Weak transcription	Brain Anterior Caudate	brain
41	chr6:166965400-166966600	Weak transcription	Right Ventricle	heart
42	chr6:166965600-166971000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:166965800-166966800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:166965800-166967000	Weak transcription	Brain Angular Gyrus	brain
45	chr6:166965800-166967200	Enhancers	Fetal Brain Female	brain
46	chr6:166965800-166967200	Enhancers	NHDF-Ad	bronchial
47	chr6:166965800-166967400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:166965800-166967400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:166965800-166968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:166965800-166968600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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