Variant report

Variant	rs58840277
Chromosome Location	chr5:119287691-119287692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56682642	1.00[AMR][1000 genomes]
rs59701439	1.00[AMR][1000 genomes]
rs59754270	1.00[AMR][1000 genomes]
rs73257659	1.00[AMR][1000 genomes]
rs73257666	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv882778	chr5:118972113-119384039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv599568	chr5:119199265-119414589	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv1833699	chr5:119233362-119304651	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119286800-119287800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:119286800-119288000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:119287000-119287800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:119287000-119287800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:119287000-119287800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:119287000-119287800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:119287000-119288000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:119287000-119289200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:119287200-119288000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:119287200-119288000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:119287200-119288000	Enhancers	Pancreas	Pancrea
12	chr5:119287200-119288400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links