Variant report

Variant	rs58849800
Chromosome Location	chr6:73688850-73688851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12190059	0.84[AFR][1000 genomes]
rs12208063	0.86[AFR][1000 genomes]
rs12210749	0.84[AFR][1000 genomes]
rs16883117	0.83[AFR][1000 genomes]
rs16883127	0.86[AFR][1000 genomes]
rs16883154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60339401	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73687400-73690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:73687600-73694000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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