Variant report

Variant	rs16883127
Chromosome Location	chr6:73686892-73686893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12190059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202465	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12203617	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208063	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12210749	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12664923	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16883117	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17806955	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58849800	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv521957	chr6:73683775-73687752	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73673000-73688000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73676600-73687000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73681800-73687400	Enhancers	Fetal Heart	heart
5	chr6:73682800-73687000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73684000-73687600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:73685000-73687000	Enhancers	Colon Smooth Muscle	Colon
8	chr6:73685000-73687200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:73685000-73687600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:73685000-73687800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:73685000-73688000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:73685200-73687400	Enhancers	GM12878-XiMat	blood
13	chr6:73686000-73687200	Enhancers	HSMM	muscle
14	chr6:73686000-73687400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:73686000-73687400	Enhancers	Brain Substantia Nigra	brain
16	chr6:73686000-73687600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:73686200-73687200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:73686200-73687200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:73686200-73687400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:73686200-73687400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:73686400-73687400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:73686600-73687000	Weak transcription	Psoas Muscle	Psoas
23	chr6:73686600-73687200	Weak transcription	HSMMtube	muscle

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