Variant report

Variant	rs17806955
Chromosome Location	chr6:73715220-73715221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12190059	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12202465	1.00[CEU][hapmap]
rs12203617	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12208063	0.85[EUR][1000 genomes]
rs12210749	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12664923	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16883117	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16883127	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16883459	1.00[YRI][hapmap]
rs17745021	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6453616	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73696800-73716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73705600-73717400	Weak transcription	Aorta	Aorta
4	chr6:73710000-73740000	Weak transcription	HMEC	breast
5	chr6:73710600-73717400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73711000-73717000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73713000-73716800	Weak transcription	Primary T cells from cord blood	blood
8	chr6:73713400-73717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:73714600-73716600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:73714800-73723200	Weak transcription	GM12878-XiMat	blood
11	chr6:73715000-73715800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:73715200-73715600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:73715200-73717200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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