Variant report

Variant	rs12664923
Chromosome Location	chr6:73659193-73659194
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73652529..73654349-chr6:73656733..73659512,2	K562	blood:
2	chr6:73657119..73659540-chr6:73737347..73739182,2	MCF-7	breast:
3	chr6:73652529..73654943-chr6:73658012..73660027,2	K562	blood:
4	chr6:73655234..73657018-chr6:73657854..73660537,2	MCF-7	breast:
5	chr17:41563672..41566538-chr6:73658673..73660193,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12190059	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12202465	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12203617	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12208063	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12210749	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883117	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883127	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17806955	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73650400-73660000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73653800-73660200	Weak transcription	Stomach Mucosa	stomach
4	chr6:73654600-73660200	Weak transcription	Aorta	Aorta
5	chr6:73654800-73662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73655800-73660000	Weak transcription	Psoas Muscle	Psoas
7	chr6:73655800-73660200	Weak transcription	Placenta	Placenta
8	chr6:73656000-73660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:73656200-73660000	Weak transcription	HSMMtube	muscle
10	chr6:73657000-73659200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:73657000-73659400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:73657000-73659800	Weak transcription	Osteobl	bone
13	chr6:73657000-73662600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:73657200-73659400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:73657600-73660000	Weak transcription	Fetal Lung	lung
16	chr6:73658200-73659600	Weak transcription	NHLF	lung
17	chr6:73658600-73659200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:73658800-73659200	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:73658800-73659200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:73658800-73660000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:73659000-73660000	Enhancers	A549	lung
22	chr6:73659000-73661000	Enhancers	HSMM	muscle

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