Variant report

Variant	rs12202465
Chromosome Location	chr6:73653891-73653892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12190059	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12203617	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12208063	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12210749	1.00[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12664923	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16883117	1.00[CEU][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16883127	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17806955	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73650400-73660000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73651800-73656600	Weak transcription	A549	lung
5	chr6:73653800-73654800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73653800-73657000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:73653800-73660200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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