Variant report

Variant	rs58852609
Chromosome Location	chr7:39306594-39306595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11973905	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981474	0.91[ASN][1000 genomes]
rs3923295	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73128410	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73128427	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39293800-39310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39301000-39310600	Weak transcription	Fetal Brain Male	brain
3	chr7:39304200-39310200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:39306000-39306600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:39306000-39311000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:39306000-39311000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:39306200-39306800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:39306200-39306800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:39306200-39309600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:39306200-39310600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:39306200-39310800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:39306200-39310800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:39306200-39311800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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